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Hi Amanda,
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<div class="">thanks for contacting us. </div>
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<div class="">As mentioned in a related ImageJ forum thread [1], modern Slidebook files now require</div>
<div class="">the enabling of the 3i Slidebook update site to open in Fiji - see their instructions [2].</div>
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<div class="">Can you check whether this update site is enabled and the images still fail to open? If this</div>
<div class="">remains the case, we might need a failing sample file before engaging with 3i to discuss the</div>
<div class="">issue.</div>
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<div class="">Best,</div>
<div class="">Sebastien</div>
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<div class="">[1] <a href="http://forum.imagej.net/t/slidebook-file-opening-failed/4533" class="">http://forum.imagej.net/t/slidebook-file-opening-failed/4533</a></div>
<div class="">[2] <a href="https://support.intelligent-imaging.com/techanswers.php#SLDinFiji" class="">https://support.intelligent-imaging.com/techanswers.php#SLDinFiji</a> </div>
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<blockquote type="cite" class="">
<div class="">On 23 Mar 2017, at 16:27, Amanda Balaban <<a href="mailto:nabalab90@gmail.com" class="">nabalab90@gmail.com</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">Hello,<br class="">
<br class="">
Hello. I have been receiving an error message when attempting to open a slide book file in fiji.<br class="">
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Exception in thread "DrawAndDrop" java.lang.ArrayIndexOutOfBoundsException: 0<br class="">
at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:634)<br class="">
at loci.formats.FormatReader.setId(FormatReader.java:1399)<br class="">
at loci.formats.ImageReader.setId(ImageReader.java:839)<br class="">
at io.scif.bf.BioFormatsFormat$Parser.typedParse(BioFormatsFormat.java:431)<br class="">
at io.scif.bf.BioFormatsFormat$Parser.typedParse(BioFormatsFormat.java:413)<br class="">
at io.scif.AbstractParser.parse(AbstractParser.java:253)<br class="">
at io.scif.AbstractParser.parse(AbstractParser.java:336)<br class="">
at io.scif.AbstractParser.parse(AbstractParser.java:52)<br class="">
at io.scif.AbstractReader.setSource(AbstractReader.java:270)<br class="">
at io.scif.services.DefaultInitializeService.initializeReader(DefaultInitializeService.java:90)<br class="">
at io.scif.img.ImgOpener.createReader(ImgOpener.java:562)<br class="">
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:145)<br class="">
at io.scif.services.DefaultDatasetIOService.open(DefaultDatasetIOService.java:126)<br class="">
at io.scif.services.DefaultDatasetIOService.open(DefaultDatasetIOService.java:111)<br class="">
at io.scif.io.DatasetIOPlugin.open(DatasetIOPlugin.java:75)<br class="">
at io.scif.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)<br class="">
at net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:135)<br class="">
at net.imagej.legacy.DefaultLegacyHooks.interceptDragAndDropFile(DefaultLegacyHooks.java:363)<br class="">
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java)<br class="">
at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)<br class="">
at java.lang.Thread.run(Thread.java:745)<br class="">
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I am running this on a Mac. Have updated/reinstalled the latest version of fiji and java. I have also tried this on other computers/fiji downloads witht he same result.<br class="">
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Thank you,<br class="">
<br class="">
Amanda<br class="">
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