[ome-users] BioFormats bug : SlideBook Version 6

[Alex Herbert]

Hi,

I have a bug when trying to open a Slidebook file from version 6 of 
their software. I have run within Fiji and updated BioFormats; the 
BioFormats version is 5.3.2-SNAPSHOT.

The error is below:

(Fiji Is Just) ImageJ 2.0.0-rc-59/1.51j; Java 1.8.0_121 [64-bit]; Linux 
4.4.0-66-generic; 91MB of 19341MB (<1%)

java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
     at java.util.ArrayList.rangeCheck(ArrayList.java:653)
     at java.util.ArrayList.get(ArrayList.java:429)
     at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:654)
     at loci.formats.FormatReader.setId(FormatReader.java:1399)
     at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:498)
     at loci.plugins.in.ImportProcess.execute(ImportProcess.java:141)
     at loci.plugins.in.Importer.showDialogs(Importer.java:140)
     at loci.plugins.in.Importer.run(Importer.java:76)
     at loci.plugins.LociImporter.run(LociImporter.java:78)
     at ij.IJ.runUserPlugIn(IJ.java:217)
     at ij.IJ.runPlugIn(IJ.java:181)
     at ij.Executer.runCommand(Executer.java:137)
     at ij.Executer.run(Executer.java:66)
     at java.lang.Thread.run(Thread.java:745)

The original image is 145Mb. When exported from Slidebook as OME-TIFF it 
contains multiple images of 3 channels with 10 z-slices and 1 timepoint. 
Frames are 512x512 pixels.

I have uploaded the file to your QA system. It has QA Bug Id: 17650.

Regards,

Alex