[ome-users] Micro-Manager datasets can't be opened anymore

[Thomas Julou]

Hello,

For 1 or 2 months, I can’t open Micro-Manager datasets anymore. More specifically, I try to open datasets stored using stack formats, with the Import>Bio-Formats menu of Fiji (IJ 1.51n, BF 5.5.3 built 5 July 2017).

The error reported is pasted below.
Thank you in advance for letting me know if you can reproduce it on demo datasets.

Best,
Thomas

--
Thomas Julou  |  Computational & Systems Biology  |  Biozentrum – University of Basel  |  Klingelbergstrasse 50/70 CH-4056 Basel  |  +41 (0)61 207 16 21


> WARNING: multiple locations found!
> java.lang.NoSuchMethodError: loci.common.RandomAccessInputStream.readUnsignedInt()J
> 	at loci.formats.tiff.TiffParser.getNextOffset(TiffParser.java:1237)
> 	at loci.formats.tiff.TiffParser.getFirstOffset(TiffParser.java:365)
> 	at loci.formats.tiff.TiffParser.getFirstIFD(TiffParser.java:319)
> 	at loci.formats.in.SEQReader.isThisType(SEQReader.java:73)
> 	at loci.formats.FormatReader.isThisType(FormatReader.java:615)
> 	at loci.formats.ImageReader.getReader(ImageReader.java:185)
> 	at loci.plugins.in.ImportProcess.createBaseReader(ImportProcess.java:618)
> 	at loci.plugins.in.ImportProcess.initializeReader(ImportProcess.java:484)
> 	at loci.plugins.in.ImportProcess.execute(ImportProcess.java:137)
> 	at loci.plugins.in.Importer.showDialogs(Importer.java:140)
> 	at loci.plugins.in.Importer.run(Importer.java:76)
> 	at loci.plugins.LociImporter.run(LociImporter.java:78)
> 	at ij.IJ.runUserPlugIn(IJ.java:217)
> 	at ij.IJ.runPlugIn(IJ.java:181)
> 	at ij.Executer.runCommand(Executer.java:137)
> 	at ij.Executer.run(Executer.java:66)
> 	at java.lang.Thread.run(Thread.java:745)
> 
> 	at loci.formats.tiff.TiffParser.getNextOffset(TiffParser.java:1237)
> 	at loci.formats.tiff.TiffParser.getFirstOffset(TiffParser.java:365)
> 	at loci.formats.tiff.TiffParser.getFirstIFD(TiffParser.java:319)
> 	at loci.formats.in.SEQReader.isThisType(SEQReader.java:73)
> 	at loci.formats.FormatReader.isThisType(FormatReader.java:615)
> 	at loci.formats.ImageReader.getReader(ImageReader.java:185)
> 	at loci.plugins.in.ImportProcess.createBaseReader(ImportProcess.java:618)
> 	at loci.plugins.in.ImportProcess.initializeReader(ImportProcess.java:484)
> 	at loci.plugins.in.ImportProcess.execute(ImportProcess.java:137)
> 	at loci.plugins.in.Importer.showDialogs(Importer.java:140)
> 	at loci.plugins.in.Importer.run(Importer.java:76)
> 	at loci.plugins.LociImporter.run(LociImporter.java:78)
> 	at ij.IJ.runUserPlugIn(IJ.java:217)
> 	at ij.IJ.runPlugIn(IJ.java:181)
> 	at ij.Executer.runCommand(Executer.java:137)
> 	at ij.Executer.run(Executer.java:66)
> 	at java.lang.Thread.run(Thread.java:745)