[ome-users] problem opening CZI files in FIJI

[Mark Carroll]

On 01/10/2017 01:59 PM, Bruckbauer, Andreas wrote:

> I have problems opening CZI files in FIJI. They are z-stacks, but when I
> open in Fiji with drag and drop I get only one slice. When I open
> through the bioformats importer, I get the following error message:
>
> (Fiji Is Just) ImageJ 2.0.0-rc-54/1.51h; Java 1.8.0_66 [64-bit]; Windows
> 7 6.1; 80MB of 12191MB (<1%)
>
> java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
>                 at java.util.ArrayList.rangeCheck(ArrayList.java:653)
>                 at java.util.ArrayList.get(ArrayList.java:429)
>                 at
> loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:633)
>                 at loci.formats.FormatReader.setId(FormatReader.java:1399)
(snip)

For others following this thread the problem is now ticketed at
http://trac.openmicroscopy.org/ome/ticket/13317 and we are happy to add
anybody to the ticket's cc: list for notification of progress.

-- Mark

The University of Dundee is a registered Scottish Charity, No: SC015096