[ome-users] ome-users Digest, Vol 143, Issue 12

[Sam Bebawi]

Hello, would you pls remove me form this distribution list. I am no longer involved with Omero.
Thanks




Sam Bebawi
Senior Project Manager
IT Division

E: sam.bebawi at uts.edu.au
P: (02) 9514 9949
M: 0419 529 990
University of Technology, Sydney
Level 11, Building 1
PO Box 123
15 Broadway NSW 2007
uts.edu.au

Think.Change.Do



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Subject: ome-users Digest, Vol 143, Issue 12

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Today's Topics:

   1. Release of Bio-Formats 5.3.4 (Helen Flynn (Staff))


----------------------------------------------------------------------

Message: 1
Date: Mon, 20 Feb 2017 16:57:21 +0000
From: "Helen Flynn (Staff)" <h.flynn at dundee.ac.uk>
To: "ome-devel at lists.openmicroscopy.org.uk"
<ome-devel at lists.openmicroscopy.org.uk>,
"ome-users at lists.openmicroscopy.org.uk"
<ome-users at lists.openmicroscopy.org.uk>
Subject: [ome-users] Release of Bio-Formats 5.3.4
Message-ID: <61D3FB09-1A7E-4A03-87E9-E9465AE5EC88 at dundee.ac.uk>
Content-Type: text/plain; charset="utf-8"

Dear All,

Today we are releasing Bio-Formats 5.3.4, a bug fix release which includes the following changes:

Bug fixes:

  *   ImageJ
     *   fix for a NullPointerException when exporting images that were not opened via the Bio-Formats importer, and thus do not have a complete OMEXMLMetadata store
  *   Java 1.9
     *   fix compile and runtime errors to enable building with Java 1.9

File format support:

  *   ECAT7
     *   update to add support for different versions of ECAT7 files (thanks to Torsten St?ter)

Updated build system:

  *   updated dependency for ome-model in the POM to version 5.4.0. This allows for improved ROI handling by enabling support for Shape objects with Transform attributes. OME-XML schema version remains unchanged as OME schema 2016-06

Documentation improvements:

  *   new public sample files added for ECAT7 (thanks to Torsten St?ter)
  *   new public sample files added for Leica LIF (thanks to Michael Goelzer)
  *   new specification document (Version 3.2) for Leica LIF
  *   updated links to OMERO documentation as a result of decoupling

Full details can be found at http://www.openmicroscopy.org/site/support/bio-formats5.3/about/whats-new.html

The software is available at:
http://downloads.openmicroscopy.org/bio-formats/5.3.4
and will shortly be available from the Java-8 update site for Fiji users.

Any problems or comments, please use the OME Forums or mailing lists:

http://www.openmicroscopy.org/site/community

Regards,

The OME Team



Dr Helen Flynn
OME Technical Writer
Centre for Gene Regulation & Expression
Open Microscopy Environment
University of Dundee
http://openmicroscopy.org


The University of Dundee is a registered Scottish Charity, No: SC015096
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