[ome-users] Import error

[Douglas Russell]

Sure, here is the Blitz log.

I'm afraid it's not very informative. It looks like whatever causes it to
fail is causing blitz to die and be restarted, going by the logs and the ps
output. Most of the services are from when OMERO was started around 18:22,
but then at the bottom we see the new services started as 23:54 which is
when I was doing the import.

Cheers,

Douglas

-bash-4.2$ ps -ewwo pid,lstart,cmd
  PID                  STARTED CMD
  177 Thu Dec 21 18:22:01 2017 python
/opt/omero/server/OMERO.server/bin/omero admin start --foreground
  880 Thu Dec 21 18:22:08 2017 icegridnode --nochdir
--Ice.Config=/opt/omero/server/OMERO.server/etc/internal.cfg,/opt/omero/server/OMERO.server/etc/master.cfg
--deploy /opt/omero/server/OMERO.server/etc/grid/default.xml
  920 Thu Dec 21 18:22:08 2017 python lib/python/fsDropBox.py
--Ice.Config=/opt/omero/server/OMERO.server-5.4.1-ice36-b75/var/master/servers/DropBox/config/config
  921 Thu Dec 21 18:22:08 2017 python lib/python/fsServerFS.py
--Ice.Config=/opt/omero/server/OMERO.server-5.4.1-ice36-b75/var/master/servers/FileServer/config/config
  932 Thu Dec 21 18:22:08 2017 python lib/python/fsServerMS.py
--Ice.Config=/opt/omero/server/OMERO.server-5.4.1-ice36-b75/var/master/servers/MonitorServer/config/config
  933 Thu Dec 21 18:22:08 2017 glacier2router
--Ice.Config=/opt/omero/server/OMERO.server-5.4.1-ice36-b75/var/master/servers/OMERO.Glacier2/config/config
  945 Thu Dec 21 18:22:08 2017 icebox
--Ice.Config=/opt/omero/server/OMERO.server-5.4.1-ice36-b75/var/master/servers/OMERO.IceStorm/config/config
  947 Thu Dec 21 18:22:08 2017 python lib/python/runProcessor.py
--Ice.Config=/opt/omero/server/OMERO.server-5.4.1-ice36-b75/var/master/servers/Processor-0/config/config
  948 Thu Dec 21 18:22:08 2017 python lib/python/runTables.py
--Ice.Config=/opt/omero/server/OMERO.server-5.4.1-ice36-b75/var/master/servers/Tables-0/config/config
 1952 Thu Dec 21 23:54:18 2017 java -Xmx5061m -XX:MaxPermSize=1g
-XX:+IgnoreUnrecognizedVMOptions -Djava.awt.headless=true
-Dlogback.configurationFile=etc/logback-indexing.xml
-Domero.logfile=var/log/${omero.name}.log -Domero.name=PixelData-0 -jar
lib/server/blitz.jar ome.pixeldata
--Ice.Config=/opt/omero/server/OMERO.server-5.4.1-ice36-b75/var/master/servers/PixelData-0/config/config
 1997 Thu Dec 21 23:54:38 2017 java -Xmx3374m -XX:MaxPermSize=1g
-XX:+IgnoreUnrecognizedVMOptions -Djava.awt.headless=true
-Dlogback.configurationFile=etc/logback-indexing.xml
-Domero.logfile=var/log/${omero.name}.log -Domero.name=Indexer-0 -jar
lib/server/blitz.jar ome.fulltext
--Ice.Config=/opt/omero/server/OMERO.server-5.4.1-ice36-b75/var/master/servers/Indexer-0/config/config
 2031 Thu Dec 21 23:54:54 2017 java -Xmx5061m -XX:MaxPermSize=1g
-XX:+IgnoreUnrecognizedVMOptions -Djava.awt.headless=true
-Dlogback.configurationFile=etc/logback.xml -Domero.logfile=var/log/${
omero.name}.log -Domero.logbase=/OMERO/ManagedRepository/
-Domero.name=Blitz-0 ome.services.blitz.Entry
--Ice.Config=/opt/omero/server/OMERO.server-5.4.1-ice36-b75/var/master/servers/Blitz-0/config/config



On Thu, 21 Dec 2017 at 12:45 Josh Moore <josh at glencoesoftware.com> wrote:

> Hi Douglas,
>
> On Wed, Dec 20, 2017 at 2:25 AM, Douglas Russell
> <douglas_russell at hms.harvard.edu> wrote:
> > Has anyone seen this import error? It's pretty vague. I imported a test
> jpg
> > to make sure import was working in general and it was fine. I updated to
> the
> > latest OMERO and still seeing the problem.
> >
> > Any ideas?
>
> Since it's an unexpected error, Ice is unfortunately swallowing all
> the good stuff. Can you send us the related Blitz and/or import logs?
>
> Cheers,
> ~Josh.
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
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