[ome-users] Indexing never completes to 100%

Dominik Lindner (Staff) d.lindner at dundee.ac.uk
Fri Oct 7 09:58:01 BST 2016


Hi,

are there constant/regular imports running? This might be a simple reason, that the importer is constantly busy and not reaching 100%.
Otherwise, could you provide us with the full log file for further investigation?

https://www.openmicroscopy.org/qa2/qa/upload/

Regards,
Dominik


> On 6 Oct 2016, at 14:54, Rainer Poehlmann <rainer.poehlmann at unibas.ch> wrote:
>
> Hi all,
>
> we recently had to manually trigger a full background re-indexing including the deletion of the contents of the FullText subdirectory as described in the OMERO Administrator manual. Reason for this was that certain searches did not show the expected results any more, most likely caused by an "unfriendly" (=forced) shutdown of the OMERO services.
>
> After the manual background re-indexing, search results re-appeared. So, from a functional point of view everything seemed to be fine again.
>
> However, the question I have is that since this background re-indexing we never ever received a value of "100% Percent indexed" again. The SQL query to check for percentage of index completion at maximum returns 99.99%, e.g.:
>
> At 2016-10-06 15:35:42+02, Percent indexed: 99.99%
>
> In addition, I can see some of the following entries in the "Indexer-0.log" file:
>
> 2016-10-03 14:25:25,076 ERROR [        ome.services.util.ServiceHandler] (2-thread-4) Method interface ome.services.util.Executor$Work.doWork invocation took 137220
>
> Is this anything we should worry about? Any input/hint would be greatly appreciated.
>
> Thanks a lot for your help, best regards,
> -Rainer
>
> --
> Rainer Pöhlmann | Research IT | Biozentrum, University of Basel | Klingelbergstrasse 50-70 | CH-4056 Basel
> Phone: +41 61 267 20 76 | Email: rainer.poehlmann at unibas.ch | www.biozentrum.unibas.ch | www.isb-sib.ch
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