[ome-users] Bug report for version 2012-06 OME-XML in Fiji, seen in grid/collection stitching

[Michael Pinkert]

Hi Mark,

I’d be happy to upload the files, but they’re currently sized at 8 gigabytes or larger.  Is that acceptable to upload, or should I try to acquire a smaller sample size?

Fiji/ImageJ appears to be using Bio-Formats version 5.2.4.  I am using the latest version of ImageJ/Fiji if it helps.

Best,
Michael Pinkert

On 11/8/16, 3:59 AM, "ome-users on behalf of Mark Carroll" <ome-users-bounces at lists.openmicroscopy.org.uk on behalf of m.t.b.carroll at dundee.ac.uk> wrote:

    On 11/07/2016 11:06 PM, Michael Pinkert wrote:
    > There appears to be a bug concerning the OME-XML reading implementation
    > in Fiji.  I apologize if this is an inappropriate place to submit the
    > bug report, but it was recommended I submit here.
    
    > [WARN] Could not transform version 2012-06 OME-XML.
    
    This one's new to us, I think; we're certainly happy to at least take a
    look to see what's going wrong. Would you be able to upload the file to
    https://www.openmicroscopy.org/qa2/qa/upload/ and we'll give it a try?
    Also, which version of Bio-Formats do you have installed?
    
    -- Mark
    
    The University of Dundee is a registered Scottish Charity, No: SC015096
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