[ome-users] Getting errors when trying to open .sld

[Sebastien Besson (Staff)]

Dear Mehmet,

this issue with the opening of some Slidebook files on Windows is expected with
Bio-Formats 5.1.9. Starting from this version, we have removed the 3i SlideBook
DLLs which were previously bundled with the Bio-Formats plugin.

In order to re-include these DLLs into your Fiji distribution, you will need to activate the
SlideBook update site. See www.openmicroscopy.org/info/slidebook<http://www.openmicroscopy.org/info/slidebook> for more information.
Please let us know of any issue.

Best regards,
Sebastien

On 3 May 2016, at 22:30, Mehmet Keles <mkeles at ucla.edu<mailto:mkeles at ucla.edu>> wrote:

Hello everyone,

Bioformats plugin suddenly stopped working. We have the most recent version of bioformats and Fiji. Here's the error we're getting. We get the same error with different files as well. Thank you!

(Fiji Is Just) ImageJ 2.0.0-rc-48/1.50i; Java 1.8.0_66 [64-bit]; Windows 7 6.1; 76MB of 24394MB (<1%)

java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
at java.util.ArrayList.rangeCheck(ArrayList.java:653)
at java.util.ArrayList.get(ArrayList.java:429)
at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:654)
at loci.formats.FormatReader.setId(FormatReader.java:1426)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)
at loci.plugins.in.Importer.showDialogs(Importer.java:140)
at loci.plugins.in.Importer.run(Importer.java:76)
at loci.plugins.LociImporter.run(LociImporter.java:78)
at ij.IJ.runUserPlugIn(IJ.java:216)
at ij.IJ.runPlugIn(IJ.java:180)
at ij.IJ.runPlugIn(IJ.java:169)
at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:499)
at HandleExtraFileTypes.run(HandleExtraFileTypes.java:72)
at ij.IJ.runUserPlugIn(IJ.java:216)
at ij.IJ.runPlugIn(IJ.java:180)
at ij.IJ.runPlugIn(IJ.java:169)
at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:515)
at ij.io.Opener.openImage(Opener.java:369)
at ij.io.Opener.openImage(Opener.java:243)
at ij.io.Opener.open(Opener.java:110)
at ij.io.Opener.openAndAddToRecent(Opener.java:292)
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:192)
at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)
at java.lang.Thread.run(Thread.java:745)

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