[ome-users] Issue with Bio-Formats Importer

Hallie Comfort halliecomfort at gmail.com
Mon Feb 29 21:44:06 GMT 2016


Hello,

I am trying to convert .nd2 files to .tiff using the Bio-Formats plugin.
When I select the importer options and submit I get this exception error
message:

(Fiji Is Just) ImageJ 2.0.0-rc-45/1.50g; Java 1.8.0_66 [64-bit]; Mac OS X
10.11.2; 95MB of 5433MB (1%) java.lang.IndexOutOfBoundsException: Index: 0,
Size: 0 at java.util.ArrayList.rangeCheck(ArrayList.java:653) at
java.util.ArrayList.get(ArrayList.java:429) at
loci.formats.FormatReader.getSizeC(FormatReader.java:719) at loci.formats.in
.NativeND2Reader.initFile(NativeND2Reader.java:1342) at
loci.formats.FormatReader.setId(FormatReader.java:1426) at
loci.formats.DelegateReader.setId(DelegateReader.java:290) at loci.plugins.
in.ImportProcess.initializeFile(ImportProcess.java:505) at loci.plugins.in
.ImportProcess.execute(ImportProcess.java:143) at loci.plugins.in
.Importer.showDialogs(Importer.java:140) at loci.plugins.in
.Importer.run(Importer.java:76) at
loci.plugins.LociImporter.run(LociImporter.java:78) at
ij.IJ.runUserPlugIn(IJ.java:212) at ij.IJ.runPlugIn(IJ.java:176) at
ij.Executer.runCommand(Executer.java:137) at ij.Executer.run(Executer.java:
66) at java.lang.Thread.run(Thread.java:745)

I have successfully converted similar files but am having problems with a
specific one. Can I send you the file to try and figure out what is wrong?
It is over 2gb.

Thanks for the help,
Hallie Comfort
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20160229/a6b989c8/attachment.html>


More information about the ome-users mailing list