[ome-users] [bioformats] Incorrect data loading from TIF file.

Stephane Dallongeville stephane.dallongeville at pasteur.fr
Wed Nov 18 13:10:43 GMT 2015

Hi Roger,

Thanks for your reply, yeah that is exactly what we see in Icy as well.
Unfortunately i don't have access to the original NDPI file but i 
attached you what the image is supposed to look as it actually display 
correctly in the default windows image viewer, as you can see it is the 
same as you obtained with tiffgt.
I hope having this information can help you in fixing the problem :)


- Stephane

Le 17/11/2015 23:28, Roger Leigh a écrit :
> On 17/11/2015 22:06, Roger Leigh wrote:
>> I opened it in Fiji and it certainly looks wrong.  I've attached a
>> screenshot of how it appears viewed with "tiffgt", the libTIFF OpenGL
>> image viewer.  Is that how it should appear?
> Also for comparison, (attached) this is what I see after import into
> Fiji with the Bio-Formats importer (the regular File->Open won't work
> for this compression type).  Is this what you see in Icy?
> Thanks,
> Roger
> -- 
> Dr Roger Leigh -- Open Microscopy Environment
> Wellcome Trust Centre for Gene Regulation and Expression,
> School of Life Sciences, University of Dundee, Dow Street,
> Dundee DD1 5EH Scotland UK   Tel: (01382) 386364
> The University of Dundee is a registered Scottish Charity, No: SC015096
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://

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