[ome-users] Exporting Shared Image Data Sets

[Stephen Taylor]

Hi Ola,

Ok. I see.

Is there another way share images to allow me to export now, or do I have to have the images in my account to this? I see there is a "Move to group" under the Explore tab. Is this the best mechanism?

Thanks,

Steve

From: ome-users [mailto:ome-users-bounces at lists.openmicroscopy.org.uk] On Behalf Of Aleksandra Tarkowska (Staff)
Sent: 30 March 2015 13:36
To: OME User Support List
Subject: Re: [ome-users] Exporting Shared Image Data Sets

Hi Steve,

I can see that your collaborator shared images with you using sharing mechanism. It is a different story then browsing through Explore Tab - a typical collaborative group. The ID 10935 is not a dataset ID, it is a Share ID. This is a special image container that gives access people who normally cannot see them at all. Unfortunately we introduced minimum functionality to metadata panel as they are in special container. That means you cannot run any scripts on them. We are going to review sharing container very soon and improve it in 5.1.x.

Thank you for letting us know about your use case. It is very helpful to see how people use it.

Kind regards
Ola

From: Stephen Taylor <stephen.taylor at imm.ox.ac.uk<mailto:stephen.taylor at imm.ox.ac.uk>>
Reply-To: OME User Support List <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Date: Mon, 30 Mar 2015 11:59:07 +0000
To: OME User Support List <ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Subject: Re: [ome-users] Exporting Shared Image Data Sets


Hi Ola,



>

> Thank you for reporting issues related to batch image export.

>

> Could you give us more details about:

>  - which type of group the data is in (private, read-only, etc). If you

> are not sure please tell us which colours are people next to the name of

> the group (just black, red, orange, green)



Just black I think. Does this help?

[cid:image001.png at 01D06AF7.1E360EF0]



>  - do you or your collaborator has any special privileges in the system,

> like group ownership or admin?

The person who shared the images is an admin. The images are stored in a non-admin  account.



>  - could you double check if you pasted correct image Ids in the batch

> image export script?



I think they look fine.



>

> Alternatively you could send as a screenshot.

>

> Would you like to try to export them by selecting multiple images in tree

> or centre panel and then clicking Download as JPEG in the right hand panel

> Arrow icon pointing down?



I can download as JPEG ok using the above method.



Thanks,



Steve



>

>

> Kind regards

> Ola

>

>

>

>

>

> On 30/03/2015 12:05, "Stephen Taylor" <stephen.taylor at imm.ox.ac.uk<mailto:stephen.taylor at imm.ox.ac.uk>>

> wrote:

>

> >Hi,

> >

> >A collaborator has shared a data set with me in OMERO and I am trying to

> >use the Batch Image Export script from the OMERO web client to download

> >these to my desktop. I get the response "No image found" when I do the

> >export. The operation works on images in my account owned and uploaded by

> >me. Do I or my collaborator have to do something further to allow me to

> >export these images?

> >

> >I am using OMERO.web 5.0.6-ice34-b53.

> >

> >Kind regards and thanks,

> >

> >Steve

> >

> >

> >

> >_______________________________________________

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> >http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users

>

>

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