[ome-users] Unable to import image files

José Salavert Torres josator at ebi.ac.uk
Mon Mar 23 14:11:37 GMT 2015


Dear OMERO users:

I was able to do the import before but now without changing configuration or anything it fails from any machine (even localhost). However Romero insight is working properly. Can you help me?:

$ omero import -s ves-ebi-8c -u USER -w XXXXX -d 1 EMD-1001/emd_1001-front.map

Using session 07757224-4203-4b05-a2a5-bf060ceee362 (root at ves-ebi-8c:4064). Idle timeout: 10.0 min. Current group: system
2015-03-23 10:40:41,398 173        [      main] INFO          ome.formats.importer.ImportConfig - OMERO Version: 5.1.0-m2-ice35-SNAPSHOT
2015-03-23 10:40:41,413 188        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 5.1.0-m2-ice35-SNAPSHOT revision: fe9755e date: 19 February 2015
2015-03-23 10:40:41,422 197        [      main] INFO   formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
2015-03-23 10:40:41,759 534        [      main] INFO      ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
2015-03-23 10:40:42,170 945        [      main] INFO      ome.formats.importer.ImportCandidates - 6 file(s) parsed into 6 group(s) with 6 call(s) to setId in 299ms. (411ms total) [0 unknowns]
2015-03-23 10:40:42,378 1153       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to ves-ebi-8c:4064
2015-03-23 10:40:42,953 1728       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
2015-03-23 10:40:43,253 2028       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Server: 5.1.0
2015-03-23 10:40:43,253 2028       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Client: 5.1.0-m2-ice35-SNAPSHOT
2015-03-23 10:40:43,253 2028       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Java Version: 1.6.0_29
2015-03-23 10:40:43,253 2028       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Name: Linux
2015-03-23 10:40:43,253 2028       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
2015-03-23 10:40:43,253 2028       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Version: 2.6.32-504.1.3.el6.x86_64
2015-03-23 10:40:43,405 2180       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Call context: {omero.group:0}
2015-03-23 10:40:43,444 2219       [      main] ERROR        ome.formats.importer.ImportLibrary - Error on import
java.lang.RuntimeException: Cannot exclusively use the managed repository.
	at ome.formats.importer.ImportLibrary.checkManagedRepo(ImportLibrary.java:709) ~[blitz.jar:na]
	at ome.formats.importer.ImportLibrary.createImport(ImportLibrary.java:316) ~[blitz.jar:na]
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:465) ~[blitz.jar:na]
	at ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:271) ~[blitz.jar:na]
	at ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java:216) [blitz.jar:na]
	at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:752) [blitz.jar:na]
2015-03-23 10:40:43,444 2219       [      main] INFO         ome.formats.importer.ImportLibrary - Exiting on error

==> Summary
0 files uploaded, 0 filesets created, 0 images imported, 0 errors in 0:00:00.114


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