[ome-users] Unable to import image files
José Salavert Torres
josator at ebi.ac.uk
Mon Mar 23 14:11:37 GMT 2015
Dear OMERO users:
I was able to do the import before but now without changing configuration or anything it fails from any machine (even localhost). However Romero insight is working properly. Can you help me?:
$ omero import -s ves-ebi-8c -u USER -w XXXXX -d 1 EMD-1001/emd_1001-front.map
Using session 07757224-4203-4b05-a2a5-bf060ceee362 (root at ves-ebi-8c:4064). Idle timeout: 10.0 min. Current group: system
2015-03-23 10:40:41,398 173 [ main] INFO ome.formats.importer.ImportConfig - OMERO Version: 5.1.0-m2-ice35-SNAPSHOT
2015-03-23 10:40:41,413 188 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 5.1.0-m2-ice35-SNAPSHOT revision: fe9755e date: 19 February 2015
2015-03-23 10:40:41,422 197 [ main] INFO formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
2015-03-23 10:40:41,759 534 [ main] INFO ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
2015-03-23 10:40:42,170 945 [ main] INFO ome.formats.importer.ImportCandidates - 6 file(s) parsed into 6 group(s) with 6 call(s) to setId in 299ms. (411ms total) [0 unknowns]
2015-03-23 10:40:42,378 1153 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to ves-ebi-8c:4064
2015-03-23 10:40:42,953 1728 [ main] INFO ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
2015-03-23 10:40:43,253 2028 [ main] INFO ome.formats.OMEROMetadataStoreClient - Server: 5.1.0
2015-03-23 10:40:43,253 2028 [ main] INFO ome.formats.OMEROMetadataStoreClient - Client: 5.1.0-m2-ice35-SNAPSHOT
2015-03-23 10:40:43,253 2028 [ main] INFO ome.formats.OMEROMetadataStoreClient - Java Version: 1.6.0_29
2015-03-23 10:40:43,253 2028 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Name: Linux
2015-03-23 10:40:43,253 2028 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
2015-03-23 10:40:43,253 2028 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Version: 2.6.32-504.1.3.el6.x86_64
2015-03-23 10:40:43,405 2180 [ main] INFO ome.formats.OMEROMetadataStoreClient - Call context: {omero.group:0}
2015-03-23 10:40:43,444 2219 [ main] ERROR ome.formats.importer.ImportLibrary - Error on import
java.lang.RuntimeException: Cannot exclusively use the managed repository.
at ome.formats.importer.ImportLibrary.checkManagedRepo(ImportLibrary.java:709) ~[blitz.jar:na]
at ome.formats.importer.ImportLibrary.createImport(ImportLibrary.java:316) ~[blitz.jar:na]
at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:465) ~[blitz.jar:na]
at ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:271) ~[blitz.jar:na]
at ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java:216) [blitz.jar:na]
at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:752) [blitz.jar:na]
2015-03-23 10:40:43,444 2219 [ main] INFO ome.formats.importer.ImportLibrary - Exiting on error
==> Summary
0 files uploaded, 0 filesets created, 0 images imported, 0 errors in 0:00:00.114
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