[ome-users] Running Bio-Formats from a plugin

Ved P. Sharma vedsharma at gmail.com
Thu Jun 25 20:11:47 BST 2015


Hi,

When I run *Bio-Formats Importer* from ImageJ, it opens an image file of
size ~ 20MB within a fraction of a second. When I open the same image file
by calling *Bio-Formats Importer* from inside a plugin using
IJ.run("Bio-Formats Importer", "options"), it takes a long time to open the
file (~ 10 sec). It starts with a white background and then after about
~5-10 seconds, the image is displayed. Can anybody tell me what am I doing
wrong when calling BF Importer from inside a plugin?

*System info:* I have ImageJ 1.49v running on WIndows 7, 64-bit computer
and I have installed bioformats_package.jar (ver 5.1.2) in the plugins
folder of ImageJ.

Thanks,

Ved

_________________________________
Ved P. Sharma, PhD
Dept. of Anatomy and Structural Biology
Albert Einstein College of Medicine
Bronx, NY 10461
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