[ome-users] PNM image not opened correctly

[Melissa Linkert]

Hi Stéphane,

> Thanks for your fast reply, i'm glad to hear the problem is fixed in
> the incoming 5.1 version :)
> Is there way to test it or we should wait a bit ? Thanks !

You can try the latest builds in the 5.1 development line by downloading
from here:

https://ci.openmicroscopy.org/view/Bio-Formats/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts/

Note that you may encounter some API changes from the 5.0.x line.  We do not recommend using
these builds in production, but they can certainly be used to verify
that your PNM file opens correctly.

For reference, the relevant Github pull request for this problem was:

http://github.com/openmicroscopy/bioformats/pull/1268

Regards,
-Melissa

On Fri, Feb 13, 2015 at 11:08:37AM +0100, Stéphane Dallongeville wrote:
> Dear Mark,
> 
> Thanks for your fast reply, i'm glad to hear the problem is fixed in
> the incoming 5.1 version :)
> Is there way to test it or we should wait a bit ? Thanks !
> 
> - Stephane
> 
> Le 13/02/2015 10:58, Mark Carroll a écrit :
> >Dear Stéphane,
> >
> >>It looks like the PNM images files are not correctly opened (data seems
> >>interleaved) in the last version of LOCI (tested with 5.0.7 and nighty
> >>version). I attached an archive contening both the original PNM file and
> >>the same image converted to TIF.
> >
> >You are quite correct: In testing using OMERO (using the corresponding
> >Bio-Formats under the hood), the latest 5.0 build does something
> >appalling to your PNM. Fortunately, the latest 5.1 build renders your
> >PNM fine, matching your TIF most agreeably; the same is true of the
> >showinf command-line tool. The Bio-Formats team may have more to add,
> >but I can at least confirm that your issue is easily reproduced and that
> >there is light at the end of the tunnel. Thank you for providing such a
> >clear example of the bug.
> >
> >Cheers,
> >
> >Mark
> >
> >The University of Dundee is a registered Scottish Charity, No: SC015096
> >_______________________________________________
> >ome-users mailing list
> >ome-users at lists.openmicroscopy.org.uk
> >http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
> 
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users