[ome-users] Suppress debug and exception output

[Joe Ping-Lin Hsiao]

Hi Curtis,

I do have formats-gpl.jar in my classpath, I just copy-paste an old list
and forgot to include it.

Anyway, adding this line to my program solves the problem, right after
creating a JVM:

    jace::proxy::loci::common::DebugTools::enableLogging("OFF");

I believe you can use "DEBUG", "WARN", and "INFO" as the parameter as well
to have different levels of outputs but I haven't tried.

Best,
Joe



On Mon, Aug 24, 2015 at 2:33 PM, Curtis Rueden <ctrueden at wisc.edu> wrote:

> Hi Joe,
>
> > 16:15:52.399 [main] DEBUG loci.common.services.ServiceFactory -
> > CLASSPATH missing interface: loci.formats.services.MetakitService
> > java.lang.ClassNotFoundException: loci.formats.services.MetakitService
>
> The MetakitService interface and implementation are part of the
> formats-gpl component. I see that once again, formats-gpl-5.1.2.jar is
> missing from your list. If you put formats-gpl on the classpath, you should
> not see that particular exception.
>
> > Any idea how to suppress them?
>
> If you do not want to include formats-gpl for some reason, then it might
> work to provide a logback configuration to suppress it by setting the log
> level to filter out DEBUG messages.
>
> See http://imagej.net/Logging for further details.
>
> Regards,
> Curtis
>
> On Mon, Aug 24, 2015 at 1:02 PM, Joe Ping-Lin Hsiao <phsiao at cs.unc.edu>
> wrote:
>
>> Hi Mark,
>>
>> I am using the .jar files from the build directory and they are:
>>
>> bsh-2.0b4.jar
>> formats-api-5.1.2.jar
>> formats-bsd-5.1.2.jar
>> formats-common-5.1.2.jar
>> guava-17.0.jar
>> hamcrest-core-1.1.jar
>> jace-runtime.jar
>> jai_imageio-5.1.2.jar
>> jcommander-1.27.jar
>> jgoodies-common-1.7.0.jar
>> jgoodies-forms-1.7.2.jar
>> joda-time-2.2.jar
>> junit-4.10.jar
>> kryo-2.24.0.jar
>> logback-classic-1.1.1.jar
>> logback-core-1.1.1.jar
>> lwf-stubs-5.1.2.jar
>> metadata-extractor-2.6.2.jar
>> minlog-1.2.jar
>> mipav-stubs-5.1.2.jar
>> native-lib-loader-2.0.2.jar
>> objenesis-2.1.jar
>> ome-xml-5.1.2.jar
>> perf4j-0.9.13.jar
>> serializer-2.7.1.jar
>> slf4j-api-1.7.6.jar
>> snakeyaml-1.6.jar
>> specification-5.1.2.jar
>> testng-6.8.jar
>> turbojpeg-5.1.2.jar
>> xalan-2.7.1.jar
>> xercesImpl-2.8.1.jar
>> xml-apis-1.3.04.jar
>> xmpcore-5.1.2.jar
>>
>> So you mean I could swap some of them with bioformats_package.jar from
>> the website?
>>
>> Thanks,
>> Joe
>>
>> On Mon, Aug 24, 2015 at 5:10 AM, Mark Carroll <m.t.b.carroll at dundee.ac.uk
>> > wrote:
>>
>>> Dear Joe,
>>>
>>>
>>> I am using Bio-formats as a reader in my C++ program through the JACE
>>>> C++ binding. When I run the 'showinf' program, I got a lot of debug and
>>>> exception messages on the console
>>>>
>>> (snip)
>>>
>>>> Any idea how to suppress them?
>>>>
>>>
>>> Are you using the new bioformats_package.jar or one of the LOCI jars
>>> like loci_formats.jar or loci_tools.jar? There was a change in logging
>>> library that may be relevant.
>>>
>>> Cheers,
>>>
>>> Mark
>>>
>>> The University of Dundee is a registered Scottish Charity, No: SC015096
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>>> ome-users at lists.openmicroscopy.org.uk
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>>>
>>
>>
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