[ome-users] Apparent Bug in reading large Leica lei files

[JOEL B. SHEFFIELD]

I have been having trouble reading a Leica *lei file which is over 400MB on
a PC running Win7, 64 bit.  There is no problem if I use a 32bit machine
that is running Win7, oddly enough.  When I try to open the file, I get the
following error message.  BTW, Wayne took a look at the situation and
duplicated it, and then suggested I send this to you.

ImageJ 1.49b11; Java 1.6.0_43 [64-bit]; Mac OS X 10.6.8; 209MB of 4000MB
(5%)

java.lang.
IndexOutOfBoundsException: Index: 1, Size: 1
        at java.util.ArrayList.RangeCheck(ArrayList.java:547)
        at java.util.ArrayList.get(ArrayList.java:322)
        at ome.xml.model.Pixels.getChannel(Pixels.java:573)
        at
ome.xml.meta.OMEXMLMetadataImpl.setLightPathEmissionFilterRef(OMEXMLMetadataImpl.java:9728)
        at
ome.xml.meta.FilterMetadata.setLightPathEmissionFilterRef(FilterMetadata.java:1686)
        at
loci.formats.in.LeicaReader.parseInstrumentData(LeicaReader.java:1427)
        at loci.formats.in.LeicaReader.initFile(LeicaReader.java:698)
        at loci.formats.FormatReader.setId(FormatReader.java:1315)
        at
loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:494)
        at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
        at loci.plugins.in.Importer.showDialogs(Importer.java:141)
        at loci.plugins.in.Importer.run(Importer.java:79)
        at loci.plugins.LociImporter.run(LociImporter.java:81)
        at ij.IJ.runUserPlugIn(IJ.java:201)
        at ij.IJ.runPlugIn(IJ.java:165)
        at ij.Executer.runCommand(Executer.java:131)
        at ij.Executer.run(Executer.java:64)
        at java.lang.Thread.run(Thread.java:680)

Joel B. Sheffield, Ph.D
Department of Biology
Temple University
Philadelphia, PA 19122
Voice: 215 204 8839
e-mail: jbs at temple.edu
URL:  http://astro.temple.edu/~jbs
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