[ome-users] Fwd: OME @ UT Southwestern

Wed May 14 15:52:57 BST 2014

Hi Liqiang
Thank you for your answer.
As Jean-Marie indicated below, it would be nice if we would get the help of the whole team for your problems as well as potentially other users.
That is why I am forwarding your e-mail to one-users list.
We will list your issue tomorrow on our Standup meeting as well and thus you will get quicker answer.

All the best
Petr

Begin forwarded message:

From: Liqiang Wang <Liqiang.Wang at UTSouthwestern.edu<mailto:Liqiang.Wang at UTSouthwestern.edu>>
Subject: RE: OME @ UT Southwestern
Date: 14 May 2014 15:36:33 BST
To: Jean-Marie Burel <j.burel at dundee.ac.uk<mailto:j.burel at dundee.ac.uk>>, Kenneth Gillen <k.h.gillen at dundee.ac.uk<mailto:k.h.gillen at dundee.ac.uk>>
Cc: Petr Walczysko <p.walczysko at dundee.ac.uk<mailto:p.walczysko at dundee.ac.uk>>, Joshua Moore <j.a.moore at dundee.ac.uk<mailto:j.a.moore at dundee.ac.uk>>

Thanks Much, All. Yep, there is a typo. But It is still not working. I will reinstall it and take another try today. Other questions, How can I setup port 80 for the web access? The default is 8080.
Here is the output from omero config get
omero at Debian-7:~$ omero config get
omero.data.dir=/home/omero/OMERO.data
omero.db.name=omero
omero.db.pass=omero
omero.db.user=omero
omero.ldap.base=ou=users,dc=biohpc,dc=swmed,dc=edu
omero.ldap.config=true
omero.ldap.urls=ldap://192.168.54.1:389
omero.ldap.user_filter=(objectClass=inetOrgPerson)
omero.ldap.user_mapping=omeName=uid, firstName=cn, lastName=sn, email=mail

Thanks
Liqiang
From: Jean-Marie Burel [mailto:j.burel at dundee.ac.uk<http://dundee.ac.uk>]
Sent: Wednesday, May 14, 2014 5:20 AM
To: Kenneth Gillen; Liqiang Wang
Cc: Petr Walczysko; Joshua Moore
Subject: Re: OME @ UT Southwestern

Thanks Kenny for spotting the typo
I read "true" myself ;-)

Liqiang,
Could I encourage you to use either our forum or our mailing lists when possible?
Go https://www.openmicroscopy.org/site under Community to find the various links.
That way members of the community might be able to help too and that will also reduce the risk of missing an e-mail.
We review daily forum posts and e-mails from the mailing lists.

Thanks

Jmarie

From: Kenneth Gillen <k.h.gillen at dundee.ac.uk<mailto:k.h.gillen at dundee.ac.uk>>
Date: Wednesday, 14 May 2014 10:16
To: jburel burel <j.burel at dundee.ac.uk<mailto:j.burel at dundee.ac.uk>>, Liqiang Wang <Liqiang.Wang at UTSouthwestern.edu<mailto:Liqiang.Wang at UTSouthwestern.edu>>
Cc: Petr Walczysko <p.walczysko at dundee.ac.uk<mailto:p.walczysko at dundee.ac.uk>>, Joshua Moore <j.a.moore at dundee.ac.uk<mailto:j.a.moore at dundee.ac.uk>>
Subject: Re: OME @ UT Southwestern

A first glance shows a couple of typos to the boolean value for the following:

omero.ldap.config=ture
omero.ldap.sync_on_login=ture

I haven’t looked further, but that’s at least something to try.

Best,

Kenny

--

Kenneth Gillen
OME System Administrator

Wellcome Trust Centre for Gene Regulation & Expression
College of Life Sciences
MSI/WTB/JBC Complex
University of Dundee
Dow Street
Dundee  DD1 5EH
United Kingdom

Tel: +44 (0) 1382 386364
Skype: kennethgillen

http://www.twitter.com/openmicroscopy

From: Jean-Marie Burel <j.burel at dundee.ac.uk<mailto:j.burel at dundee.ac.uk>>
Date: Tuesday, 13 May 2014 22:08
To: Liqiang Wang <Liqiang.Wang at UTSouthwestern.edu<mailto:Liqiang.Wang at UTSouthwestern.edu>>
Cc: Petr Walczysko <p.walczysko at dundee.ac.uk<mailto:p.walczysko at dundee.ac.uk>>, Joshua Moore <j.a.moore at dundee.ac.uk<mailto:j.a.moore at dundee.ac.uk>>, Kenneth Gillen <k.h.gillen at Dundee.ac.uk<mailto:k.h.gillen at Dundee.ac.uk>>
Subject: Re: OME @ UT Southwestern

Hi Liqiang

Sorry for not replying earlier,  we are very busy at the moment with our coming release.
I have forwarded your e-mail to josh moore (cc'd)
Bringing our system administrator Kenny in the loop.

Regards

Jmarie
From: Liqiang Wang <Liqiang.Wang at UTSouthwestern.edu<mailto:Liqiang.Wang at UTSouthwestern.edu>>
Date: Tuesday, 13 May 2014 17:31
To: jburel burel <j.burel at dundee.ac.uk<mailto:j.burel at dundee.ac.uk>>
Cc: Petr Walczysko <p.walczysko at dundee.ac.uk<mailto:p.walczysko at dundee.ac.uk>>
Subject: RE: OME @ UT Southwestern

Hi All,
Any update for it?

Thanks
Liqiang

From: Liqiang Wang
Sent: Monday, May 12, 2014 2:12 PM
To: 'j.burel at dundee.ac.uk<mailto:'j.burel at dundee.ac.uk>'
Cc: 'p.walczysko at dundee.ac.uk<mailto:'p.walczysko at dundee.ac.uk>'
Subject: OME @ UT Southwestern

Hi Jean and Petr,
I’m working on building the OME server. But the ldap authentication does not work. We are using openldap as our ldap. Here is OME ldap configuration. Also, how can I get ldap debug log from OME?
############################################
# Ldap properties
############################################
omero.ldap.config=ture
omero.ldap.urls=192.168.54.1:389
omero.ldap.username=
omero.ldap.password=
omero.ldap.base=ou=users,dc=biohpc,dc=swmed,dc=edu
#omero.ldap.referral=ignore

omero.ldap.sync_on_login=ture

#omero.ldap.user_filter=(objectClass=person)
omero.ldap.user_filter=(objectClass=inetOrgPerson)
#omero.ldap.user_mapping=omeName=cn,firstName=givenName,lastName=sn,email=mail
omero.ldap.user_mapping=omeName=uid,firstName=cn,lastName=sn,email=mail

#omero.ldap.group_filter=(objectClass=groupOfNames)
omero.ldap.group_filter=(objectClass=posixGroup)
omero.ldap.group_mapping=name=cn

## Without a prefix the "new_user_group" property
## specifies the name of a single group which all
## new users will be added to.
omero.ldap.new_user_group=default

Thanks
Liqiang

________________________________

UT Southwestern Medical Center
The future of medicine, today.

The University of Dundee is a registered Scottish Charity, No: SC015096

The University of Dundee is a registered Scottish Charity, No: SC015096
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