[ome-users] CLI importer and groups

Mark Woodbridge m.woodbridge at imperial.ac.uk
Mon Jun 2 15:20:26 BST 2014


Thanks, yes, it works like this:

login -s localhost --sudo root -u mwoodbri -w <password>
sessions group CISBIC
import /tmp/omero/mwoodbri

Ignore the previous message - the sudo session was still open, so it 
probably isn't a wider problem.

Thanks again,

Mark.

On 02/06/14 15:08, Sebastien Besson wrote:
> Hi Mark,
>
> we have a ticket opened for broken `-g` flag with the CLI import command:
> http://trac.openmicroscopy.org.uk/ome/ticket/12288
>
> Based upon your report, the issue may be more general than just the sudo
> usage.
> In the meantime, the following workflow should provide a workaround:
>
> omero> sessions group XXX
> omero> import -s localhost -u mwoodbri /tmp/omero/mwoodbri
>
> We can cc you on the ticket (which is assigned to the 5.0.3 milestone)
> if you are interested.
>
> Best regards
> Sebastien
>
> On 2 Jun 2014, at 14:55, Mark Woodbridge <m.woodbridge at imperial.ac.uk
> <mailto:m.woodbridge at imperial.ac.uk>> wrote:
>
>> Hi,
>>
>> I'm trying to import some data into a group other than "default" using
>> the group flag of the CLI importer i.e:
>>
>> omero> import -s localhost -g XXX -u mwoodbri /tmp/omero/mwoodbri
>>
>> I've tried setting XXX to be the group name and ID but neither seems
>> to make a difference. Am I doing something wrong?
>>
>> Thanks,
>>
>> Mark.
>> _______________________________________________
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>> ome-users at lists.openmicroscopy.org.uk
>> <mailto:ome-users at lists.openmicroscopy.org.uk>
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
>
>
> Dr Sébastien Besson
> Open Microscopy Environment / Harvard Medical School
> Wellcome Trust Centre for Gene Regulation and Expression,
> College of Life Sciences, University of Dundee, Dow Street,
> Dundee DD1 5EH Scotland UK   Tel: (01382) 386364
>
>
> The University of Dundee is a registered Scottish Charity, No: SC015096




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