[ome-users] Version of JAI for loading tiff images

[Melissa Linkert]

Hi Fethallah,

> I added the jai_imageio.jar file as you suggested (and added it to in
> matlab using javaaddpath).
> Unfortunately, I'm still having the same error message: ... Please install
> JAI from
> https://jai.dev.java.net/ ....
> 
> I have uploaded such a file as you suggested.

Thank you for uploading a sample file.  The uploaded file is not a TIFF,
but rather an HDF5 file produced by Imaris.  If you rename the file
from Example_Fethallah.tif to Example_Fethallah.ims, then Bio-Formats
should be able to read it.

Regards,
-Melissa

On Tue, Jan 28, 2014 at 01:48:29PM +0100, Fethallah Benmansour wrote:
> Dear Sebastien,
> 
> Thanks for your prompt reply.
> I added the jai_imageio.jar file as you suggested (and added it to in
> matlab using javaaddpath).
> Unfortunately, I'm still having the same error message: ... Please install
> JAI from
> https://jai.dev.java.net/ ....
> 
> I have uploaded such a file as you suggested.
> 
> Thanks for your help.
> 
> Kind regards,
> 
> --
> Fethallah
> 
> On Tue, Jan 28, 2014 at 12:10 PM, Sebastien Besson <s.besson at dundee.ac.uk>wrote:
> 
> >  Hi Fethallah,
> >
> >  you could try using the jai_imageio.jar file that is available under
> > http://downloads.openmicroscopy.org/bio-formats (under the Components
> > section).
> > If that JAR still fails, would it be possible to upload a failing TIFF file
> > to http://qa.openmicroscopy.org.uk/qa/upload/ ?
> >
> >  Best,
> > Sebastien
> >
> >  On 28 Jan 2014, at 09:22, Fethallah Benmansour <
> > fethallah.benmansour at gmail.com> wrote:
> >
> >  Hi all,
> >
> >  I would like to read ome Multipage tiff files from matlab.
> > I first tried to read them with a standard multipage tiff reader and it
> > didn't work.
> > Then, I tried  bfopen. I had the following error message:
> >  Error using bfGetReader (line 80)
> > Java exception occurred:
> > loci.formats.MissingLibraryException: Java Advanced Imaging (JAI) is
> > required to read some TIFF
> > files. Please install JAI from https://jai.dev.java.net/
> >
> >  I downloaded the latest vertsion of the jar file from
> > http://www.oracle.com/technetwork/java/current-142188.html
> > and added it using javaaddclass.
> >
> >  Unfortunately it still crashes.
> > Could anyone tell me which version of jai*.jar is needed ?
> >
> >  Thanks into advance,
> >
> >  Kind regards,
> >
> >  --
> > Fethallah
> >   _______________________________________________
> > ome-users mailing list
> > ome-users at lists.openmicroscopy.org.uk
> > http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
> >
> >
> >   Dr Sébastien Besson
> > Open Microscopy Environment / Harvard Medical School
> > Wellcome Trust Centre for Gene Regulation and Expression,
> > College of Life Sciences, University of Dundee, Dow Street,
> > Dundee DD1 5EH Scotland UK   Tel: (01382) 386364
> >
> >
> > The University of Dundee is a registered Scottish Charity, No: SC015096
> >

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