[ome-users] Opera scanner Flex files: bfopen very slow

[Fethallah Benmansour]

Thanks Christophe, you made my day :-)

I suspected something as simple as that. Where can I find the complete
documentation for bf objects ?

Thanks into advance,

--
Fethallah


On Tue, Jan 14, 2014 at 3:12 PM, Christophe TREFOIS <
christophe.trefois at uni.lu> wrote:

>  Did you try setting setGroupFile(false) on the bf object?
>
>
>
> Best,
>
>
>
> --
>
> Christophe
>
>
>
> *From:* ome-users-bounces at lists.openmicroscopy.org.uk [mailto:
> ome-users-bounces at lists.openmicroscopy.org.uk] *On Behalf Of *Fethallah
> Benmansour
> *Sent:* mardi 14 janvier 2014 09:52
> *To:* ome-users at lists.openmicroscopy.org.uk
> *Subject:* [ome-users] Opera scanner Flex files: bfopen very slow
>
>
>
> Dear All,
>
>
>
> I have tried to load one flex file using the matlab function bfopen.
>
> If the flex file is isolated in one directory, then the function reads it
> immediately.
>
> However, if the file belongs to the plate directory with many flex files
> near it, then the loading take about 1.5 hours (not to say forever).
>
> In fact, it does the following steps:
>
>
>
> #
>
> Storing well indices
>
> #
>
> Looking for other .flex files
>
> #
>
> Looking for files that are in the same dataset as
> Y:\SomeLocation\Meas_01(2014-01-09_17-02-50)\003003004.flex
>
> #
>
> Measurement files not found.
>
> #
>
> Making sure that all .flex files are valid
>
> #
>
> Grouping together files in the same dataset
>
>
>
> ...etc
>
>
>
> The plate is huge indeed (about 20 Gigs of data).
>
>
>
> Is there a way to force it to read only one specific file, without
> extracting the metadata from the whole plate ?
>
>
>
> Thanks into advance,
>
>
>
> --
>
> Fethallah
>
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