[ome-users] Problem with CZI image file

Stéphane Dallongeville stephane.dallongeville at pasteur.fr
Mon Feb 17 15:41:28 GMT 2014


Dear LOCI team,

Just wanted to report you an issue meet by a Icy user. He obtain the 
following error while trying to load a CZI file with LOCI:

java.lang.IllegalArgumentException: Invalid T index: 1/1
     at loci.formats.FormatTools.getIndex(FormatTools.java:383)
     at loci.formats.FormatTools.getIndex(FormatTools.java:328)
     at loci.formats.FormatReader.getIndex(FormatReader.java:1071)
     at 
loci.formats.in.ZeissCZIReader.assignPlaneIndices(ZeissCZIReader.java:1017)
     at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:612)
     at loci.formats.FormatReader.setId(FormatReader.java:1360)

Tested on 5.0.0 RC1 and the last daily RC2.
As the image file is large i'm uploading it on the LOCI FTP test server: 
AO5.czi
Should be done in 10 minutes :)

Best,

-- 
Stephane Dallongeville
Unité d'Analyse d'Images Biologiques
CNRS URA 2582
Institut Pasteur
25 rue du Dr Roux - 75015 Paris - France

Tel: +33 (0)1 45 68 87 01
Fax: +33 (0)1 40 61 33 30

http://www.bioimageanalysis.org/






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