[ome-users] Fwd: problem opening .ims files

[Josh Moore]

Forwarding to the list.
~J.

> I tried to download the update for Bio-Formats to troubleshoot a problem i was having opening .ims files.  This is the exception error I received.
> 
> java.io.FileNotFoundException: http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/trunk/artifacts/loci_tools.jar
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
> at sun.net.www.protocol.http.HttpURLConnection$6.run(HttpURLConnection.java:1514)
> at java.security.AccessController.doPrivileged(Native Method)
> at sun.net.www.protocol.http.HttpURLConnection.getChainedException(HttpURLConnection.java:1508)
> at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1162)
> at loci.plugins.Updater.install(Updater.java:197)
> at loci.plugins.Updater.run(Updater.java:108)
> at ij.IJ.runUserPlugIn(IJ.java:195)
> at ij.IJ.runPlugIn(IJ.java:160)
> at ij.Executer.runCommand(Executer.java:128)
> at ij.Executer.run(Executer.java:64)
> at java.lang.Thread.run(Thread.java:695)
> Caused by: java.io.FileNotFoundException: http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/trunk/artifacts/loci_tools.jar
> at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1457)
> at sun.net.www.protocol.http.HttpURLConnection.getHeaderField(HttpURLConnection.java:2340)
> at java.net.URLConnection.getHeaderFieldInt(URLConnection.java:579)
> at java.net.URLConnection.getContentLength(URLConnection.java:474)
> at loci.plugins.Updater.install(Updater.java:195)
> ... 6 more
> 
> This is the exception error I receive when trying to open the .ims files
> 
> ImageJ 1.47v; Java 1.6.0_65 [64-bit]; Mac OS X 10.6.8; 21MB of 658MB (3%)
> 
> java.lang.NumberFormatException: For input string: "0.000"
> at java.lang.NumberFormatException.forInputString(NumberFormatException.java:48)
> at java.lang.Integer.parseInt(Integer.java:458)
> at java.lang.Integer.parseInt(Integer.java:499)
> at loci.formats.in.ImarisHDFReader.initFile(ImarisHDFReader.java:194)
> at loci.formats.FormatReader.setId(FormatReader.java:901)
> at loci.plugins.importer.Importer.run(Importer.java:267)
> at loci.plugins.LociImporter.run(LociImporter.java:77)
> at ij.IJ.runUserPlugIn(IJ.java:195)
> at ij.IJ.runPlugIn(IJ.java:160)
> at ij.IJ.runPlugIn(IJ.java:149)
> at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:258)
> at HandleExtraFileTypes.run(HandleExtraFileTypes.java:37)
> at ij.IJ.runUserPlugIn(IJ.java:195)
> at ij.IJ.runPlugIn(IJ.java:160)
> at ij.IJ.runPlugIn(IJ.java:149)
> at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:438)
> at ij.io.Opener.openImage(Opener.java:310)
> at ij.io.Opener.openImage(Opener.java:333)
> at ij.io.Opener.open(Opener.java:143)
> at ij.io.Opener.open(Opener.java:70)
> at ij.plugin.Commands.run(Commands.java:27)
> at ij.IJ.runPlugIn(IJ.java:166)
> at ij.Executer.runCommand(Executer.java:128)
> at ij.Executer.run(Executer.java:64)
> at java.lang.Thread.run(Thread.java:695)
> 
> Sharmon Lebby
> Research Assistant
> University of Texas San Antonio