[ome-users] Unable to run scripts - no processors available
John Webber (NBI)
John.Webber at nbi.ac.uk
Wed Oct 9 09:59:44 BST 2013
Hi Josh,
Yesterday none of the scripts were working and the "Processor-0.log" wasn't being updated. Today all of the scripts seem to be working!
Not sure why this would be - I wonder if it was timings of when I disabled and then re-enabled "Processor-0".
In order to prove that everything is now correct, I have restarted the servers and everything looks fine... so sorry bugging the distribution list with something that is now OK!
Thanks again
John
-----Original Message-----
From: Josh Moore [mailto:josh at glencoesoftware.com]
Sent: 08 October 2013 18:51
To: John Webber (NBI)
Cc: ome-users at lists.openmicroscopy.org.uk
Subject: Re: [ome-users] Unable to run scripts - no processors available
On Oct 8, 2013, at 6:43 PM, John Webber (NBI) wrote:
> All,
>
> When I attempt to run a script on a new Omer server I have recently built, I see an error that states:
>
> Cannot load the script: <id>
> Error: "No processor available!"
Which of the scripts from `bin/omero script list` is failing?
> I have stopped, disabled, re-enabled and restarted the "Processor-0", using the commands:
>
> bin/omero admin ice "server <cmd> Processor-0"
> (where <cmd> is stop, disable, enable and start)
>
> Please can anyone give me some advice as to why my scripts do not seem to be working?
Could you possibly send var/log/Processor-0.log?
Cheers,
~Josh
> I have checked for python and pytables on my server, and running the admin diagnostics shows the following:
>
> ======================================================================
> ==========
> OMERO Diagnostics 4.4.8p1-ice33-b304
> ======================================================================
> ==========
>
> Commands: java -version 1.7.0 (/usr/bin/java)
> Commands: python -V 2.4.3 (/usr/bin/python)
> Commands: icegridnode --version 3.3.1 (/usr/bin/icegridnode)
> Commands: icegridadmin --version 3.3.1 (/usr/bin/icegridadmin)
> Commands: psql --version 8.4.13 (/usr/bin/psql)
>
> Server: icegridnode running
> Server: Blitz-0 active (pid = 3331, enabled)
> Server: DropBox active (pid = 3342, enabled)
> Server: FileServer active (pid = 3333, enabled)
> Server: Indexer-0 active (pid = 3334, enabled)
> Server: MonitorServer active (pid = 3343, enabled)
> Server: OMERO.Glacier2 active (pid = 3337, enabled)
> Server: OMERO.IceStorm active (pid = 3344, enabled)
> Server: PixelData-0 active (pid = 3353, enabled)
> Server: Processor-0 active (pid = 3354, enabled)
> Server: Tables-0 active (pid = 3341, enabled)
> Server: TestDropBox inactive (enabled)
>
> OMERO: SSL port 4064
> OMERO: TCP port 4063
>
> Log dir: /opt/OMERO.server-4.4.8p1-ice33-b304/var/log exists
>
> Log files: Blitz-0.log 17.0 MB errors=12 warnings=64
> Log files: DropBox.log 23.0 KB errors=8 warnings=10
> Log files: FileServer.log 2.0 KB
> Log files: Indexer-0.log 31.0 MB errors=54 warnings=64
> Log files: MonitorServer.log 9.0 KB errors=0 warnings=1
> Log files: OMEROweb.log 0.0 KB
> Log files: OMEROweb_request.log 0.0 KB
> Log files: PixelData-0.log 266.0 KB errors=54 warnings=115
> Log files: Processor-0.log 1.0 KB
> Log files: Tables-0.log 0.0 KB
> Log files: TestDropBox.log n/a
> Log files: master.err 21.0 KB
> Log files: master.out 0.0 KB
> Log files: Total size 48.90 MB
>
> Parsing Blitz-0.log:[line:119] => Server restarted <= Parsing
> Blitz-0.log:[line:418] => Server restarted <= Parsing
> Blitz-0.log:[line:90500] => Server restarted <= Parsing
> Blitz-0.log:[line:90636] => Server restarted <= Parsing
> Blitz-0.log:[line:90766] => Server restarted <= Parsing
> Blitz-0.log:[line:91053] => Server restarted <= Parsing
> Blitz-0.log:[line:98690] => Server restarted <= Parsing
> Blitz-0.log:[line:111055] Your postgres hostname and/or port is
> invalid Parsing Blitz-0.log:[line:111166] Your postgres hostname
> and/or port is invalid Parsing Blitz-0.log:[line:111277] Your postgres
> hostname and/or port is invalid Parsing Blitz-0.log:[line:111510] =>
> Server restarted <=
>
> Environment:OMERO_HOME=(unset)
> Environment:OMERO_NODE=(unset)
> Environment:OMERO_MASTER=(unset)
> Environment:PATH=/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/
> omero/bin
> Environment:ICE_HOME=(unset)
> Environment:LD_LIBRARY_PATH=(unset)
> Environment:DYLD_LIBRARY_PATH=(unset)
>
> OMERO data dir: '/OMERO' Exists? True Is writable? True
> OMERO.web status... [RUNNING] (PID 3760)
>
>
> Checking for the scripts on the server itself, I see:
>
> [omero at v0362 Omero]$ bin/omero script list Previously logged in to
> localhost:4064 as root
> Server: [localhost]
> Username: [root]
> Password:
> Created session 4b0e346b-c123-49ea-891c-21270decc28f
> (root at localhost:4064). Idle timeout: 10.0 min. Current group: system
> id | Official scripts
> ----+-----------------------------------------------
> 1 | /omero/setup_scripts/FLIM_initialise.py
> 2 | /omero/analysis_scripts/Plot_Profile.py
> 3 | /omero/analysis_scripts/Kymograph_Analysis.py
> 4 | /omero/analysis_scripts/Kymograph.py
> 5 | /omero/util_scripts/Images_From_ROIs.py
> 6 | /omero/util_scripts/Dataset_To_Plate.py
> 7 | /omero/util_scripts/Combine_Images.py
> 8 | /omero/util_scripts/Channel_Offsets.py
> 9 | /omero/import_scripts/Populate_ROI.py
> 10 | /omero/figure_scripts/Movie_Figure.py
> 11 | /omero/figure_scripts/ROI_Split_Figure.py
> 12 | /omero/figure_scripts/Thumbnail_Figure.py
> 13 | /omero/figure_scripts/Split_View_Figure.py
> 14 | /omero/figure_scripts/Movie_ROI_Figure.py
> 15 | /omero/export_scripts/Batch_Image_Export.py
> 16 | /omero/export_scripts/Make_Movie.py
> (16 rows)
> [omero at v0362 Omero]$
>
> Thanks
> John
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