[ome-users] Unable to run scripts - no processors available

[Josh Moore]

On Oct 8, 2013, at 6:43 PM, John Webber (NBI) wrote:

> All,
> 
> When I attempt to run a script on a new Omer server I have recently built, I see an error that states:
> 
>                Cannot load the script: <id>
>                Error:  "No processor available!"

Which of the scripts from `bin/omero script list` is failing?


> I have stopped, disabled, re-enabled and restarted the "Processor-0", using the commands:
> 
> bin/omero admin ice "server <cmd> Processor-0"
> (where <cmd> is stop, disable, enable and start)
> 
> Please can anyone give me some advice as to why my scripts do not seem to be working?

Could you possibly send var/log/Processor-0.log?

Cheers,
~Josh


> I have checked for python and pytables on my server, and running the admin diagnostics shows the following:
> 
> ================================================================================
> OMERO Diagnostics 4.4.8p1-ice33-b304
> ================================================================================
> 
> Commands:   java -version                  1.7.0     (/usr/bin/java)
> Commands:   python -V                      2.4.3     (/usr/bin/python)
> Commands:   icegridnode --version          3.3.1     (/usr/bin/icegridnode)
> Commands:   icegridadmin --version         3.3.1     (/usr/bin/icegridadmin)
> Commands:   psql --version                 8.4.13    (/usr/bin/psql)
> 
> Server:     icegridnode                    running
> Server:     Blitz-0                        active (pid = 3331, enabled)
> Server:     DropBox                        active (pid = 3342, enabled)
> Server:     FileServer                     active (pid = 3333, enabled)
> Server:     Indexer-0                      active (pid = 3334, enabled)
> Server:     MonitorServer                  active (pid = 3343, enabled)
> Server:     OMERO.Glacier2                 active (pid = 3337, enabled)
> Server:     OMERO.IceStorm                 active (pid = 3344, enabled)
> Server:     PixelData-0                    active (pid = 3353, enabled)
> Server:     Processor-0                    active (pid = 3354, enabled)
> Server:     Tables-0                       active (pid = 3341, enabled)
> Server:     TestDropBox                    inactive (enabled)
> 
> OMERO:      SSL port                       4064
> OMERO:      TCP port                       4063
> 
> Log dir:    /opt/OMERO.server-4.4.8p1-ice33-b304/var/log exists
> 
> Log files:  Blitz-0.log                    17.0 MB       errors=12   warnings=64
> Log files:  DropBox.log                    23.0 KB       errors=8    warnings=10
> Log files:  FileServer.log                 2.0 KB
> Log files:  Indexer-0.log                  31.0 MB       errors=54   warnings=64
> Log files:  MonitorServer.log              9.0 KB        errors=0    warnings=1
> Log files:  OMEROweb.log                   0.0 KB
> Log files:  OMEROweb_request.log           0.0 KB
> Log files:  PixelData-0.log                266.0 KB      errors=54   warnings=115
> Log files:  Processor-0.log                1.0 KB
> Log files:  Tables-0.log                   0.0 KB
> Log files:  TestDropBox.log                n/a
> Log files:  master.err                     21.0 KB
> Log files:  master.out                     0.0 KB
> Log files:  Total size                     48.90 MB
> 
> Parsing Blitz-0.log:[line:119] => Server restarted <=
> Parsing Blitz-0.log:[line:418] => Server restarted <=
> Parsing Blitz-0.log:[line:90500] => Server restarted <=
> Parsing Blitz-0.log:[line:90636] => Server restarted <=
> Parsing Blitz-0.log:[line:90766] => Server restarted <=
> Parsing Blitz-0.log:[line:91053] => Server restarted <=
> Parsing Blitz-0.log:[line:98690] => Server restarted <=
> Parsing Blitz-0.log:[line:111055] Your postgres hostname and/or port is invalid
> Parsing Blitz-0.log:[line:111166] Your postgres hostname and/or port is invalid
> Parsing Blitz-0.log:[line:111277] Your postgres hostname and/or port is invalid
> Parsing Blitz-0.log:[line:111510] => Server restarted <=
> 
> Environment:OMERO_HOME=(unset)
> Environment:OMERO_NODE=(unset)
> Environment:OMERO_MASTER=(unset)
> Environment:PATH=/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/omero/bin
> Environment:ICE_HOME=(unset)
> Environment:LD_LIBRARY_PATH=(unset)
> Environment:DYLD_LIBRARY_PATH=(unset)
> 
> OMERO data dir: '/OMERO'        Exists? True    Is writable? True
> OMERO.web status... [RUNNING] (PID 3760)
> 
> 
> Checking for the scripts on the server itself, I see:
> 
> [omero at v0362 Omero]$ bin/omero script list
> Previously logged in to localhost:4064 as root
> Server: [localhost]
> Username: [root]
> Password:
> Created session 4b0e346b-c123-49ea-891c-21270decc28f (root at localhost:4064). Idle timeout: 10.0 min. Current group: system
> id | Official scripts
> ----+-----------------------------------------------
> 1  | /omero/setup_scripts/FLIM_initialise.py
> 2  | /omero/analysis_scripts/Plot_Profile.py
> 3  | /omero/analysis_scripts/Kymograph_Analysis.py
> 4  | /omero/analysis_scripts/Kymograph.py
> 5  | /omero/util_scripts/Images_From_ROIs.py
> 6  | /omero/util_scripts/Dataset_To_Plate.py
> 7  | /omero/util_scripts/Combine_Images.py
> 8  | /omero/util_scripts/Channel_Offsets.py
> 9  | /omero/import_scripts/Populate_ROI.py
> 10 | /omero/figure_scripts/Movie_Figure.py
> 11 | /omero/figure_scripts/ROI_Split_Figure.py
> 12 | /omero/figure_scripts/Thumbnail_Figure.py
> 13 | /omero/figure_scripts/Split_View_Figure.py
> 14 | /omero/figure_scripts/Movie_ROI_Figure.py
> 15 | /omero/export_scripts/Batch_Image_Export.py
> 16 | /omero/export_scripts/Make_Movie.py
> (16 rows)
> [omero at v0362 Omero]$
> 
> Thanks
> John