[ome-users] Hamamatsu export kCGErrorFailure

[Melissa Linkert]

Hi Andreas,

> I recently noticed a new error message while extracting tiles from a
> ndpi (Hamamatsu) file. I'm using the most recent (stable)
> loci/bftools versions. Unfortunately, I couldn't find anything
> related to that error on google thus I hope you have an hint for me.
> It's running on a MacOSX XServe and the error message is attached
> here[1].

Are you using the 4.4.9 version of Bio-Formats?  If so, I would very
much recommend that you try the 5.0.0-beta1 version instead:

http://downloads.openmicroscopy.org/bio-formats/5.0.0-beta1/

If 5.0.0-beta1 also produces an error message, please let us know.

Regards,
-Melissa

On Mon, Nov 25, 2013 at 04:46:33PM +0000, Andreas Heindl wrote:
> Dear all,
> 
> I recently noticed a new error message while extracting tiles from a
> ndpi (Hamamatsu) file. I'm using the most recent (stable)
> loci/bftools versions. Unfortunately, I couldn't find anything
> related to that error on google thus I hope you have an hint for me.
> It's running on a MacOSX XServe and the error message is attached
> here[1].
> 
> Thanks a lot and regards,
> Andreas
> 
> 
> [1]
> 
> 012A-2013-11-18_15.06.56.ndpi
> Reading IFDs
> Populating metadata
> Populating OME metadata
> [Hamamatsu NDPI] -> ./012A-2013-11-18_15.06.56/Tile0.jpg [JPEG]
> Mon Nov 25 16:39:42 yy1.local java[37867] <Error>: kCGErrorFailure:
> Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are
> logged.
> Exception in thread "main" java.lang.InternalError: Can't connect to
> window server - not enough permissions.
>     at java.lang.ClassLoader$NativeLibrary.load(Native Method)
>     at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1833)
>     at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1730)
>     at java.lang.Runtime.loadLibrary0(Runtime.java:823)
>     at java.lang.System.loadLibrary(System.java:1044)
>     at sun.security.action.LoadLibraryAction.run(LoadLibraryAction.java:50)
>     at java.security.AccessController.doPrivileged(Native Method)
>     at java.awt.Toolkit.loadLibraries(Toolkit.java:1605)
>     at java.awt.Toolkit.<clinit>(Toolkit.java:1627)
>     at loci.formats.codec.JPEGTileDecoder.initialize(JPEGTileDecoder.java:136)
>     at loci.formats.in.NDPIReader.setupService(NDPIReader.java:365)
>     at loci.formats.in.NDPIReader.openBytes(NDPIReader.java:114)
>     at loci.formats.FormatReader.openBytes(FormatReader.java:781)
>     at loci.formats.ImageReader.openBytes(ImageReader.java:400)
>     at loci.formats.tools.ImageConverter.convertPlane(ImageConverter.java:544)
>     at loci.formats.tools.ImageConverter.testConvert(ImageConverter.java:486)
>     at loci.formats.tools.ImageConverter.main(ImageConverter.java:672)
> 
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