[ome-users] Importing large image series and Cell^R data

[Roger Leigh]

On 22/05/2013 14:15, Colin Rickman wrote:
>
> On 21 May 2013, at 16:02, Roger Leigh <r.leigh at dundee.ac.uk
> <mailto:r.leigh at dundee.ac.uk>> wrote:
>
>> On 21/05/2013 10:37, Colin Rickman wrote:
>>
>>> On 15 May 2013, at 11:13, Roger Leigh <r.leigh at DUNDEE.AC.UK
>>> <mailto:r.leigh at DUNDEE.AC.UK>
>>> <mailto:r.leigh at DUNDEE.AC.UK>> wrote:
>>
>>>> Can you reproduce the failure with a smaller series?
>>>
>>> I've tested this and I can with what seems to be any number of
>>> individual files. In all cases the importer states "imported 0 of 1" and
>>> sits scanning indefinitely. However, I did try entering the directory in
>>> the import window and selecting all of the individual tiff files (a
>>> 10,000 file subset) and after a long wait to start the importer stated
>>> "imported 0 of 10,000" and slowly started working through the files - it
>>> is currently just over half way through.
>>
>> This sounds like progress, albeit slow.  If you have any sample plain
>> TIFF files like this you'd like us to look at WRT import speed, then you
>> can also upload these as a zip as for the other data, below.
>
> I'l upload a small subset shortly. The upload of 10,000 files failed
> after just over 5000 files. All remaining files failed to upload. I hit
> submit failures (unticking file and selecting log) so you can see what
> happened - it looks like it may have generated a single log for every
> file rather than one log file for all files.

A sample will certainly be very useful, thanks.  I'll take a look in
more detail once it's uploaded.


Thanks,
Roger

--
Dr Roger Leigh -- Open Microscopy Environment
Wellcome Trust Centre for Gene Regulation and Expression,
College of Life Sciences, University of Dundee, Dow Street,
Dundee DD1 5EH Scotland UK   Tel: (01382) 386364

The University of Dundee is a registered Scottish Charity, No: SC015096