[ome-users] NumberFormatException when importing image series using LOCI in ImageJ

[Dan Ruderman]

I am new to the LOCI plugin in ImageJ, so I apologize if this issue is 
old hat.

I am running into this Exception when importing an image sequence using 
the LOCI plugin.

Error message:

java.lang.NumberFormatException: For input string: "3t"
     at 
java.lang.NumberFormatException.forInputString(NumberFormatException.java:48)
     at java.lang.Integer.parseInt(Integer.java:458)
     at java.lang.Integer.parseInt(Integer.java:499)
     at loci.formats.in.CellomicsReader.initFile(CellomicsReader.java:292)
     at loci.formats.FormatReader.setId(FormatReader.java:1333)
     at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:482)
     at loci.plugins.in.ImportProcess.execute(ImportProcess.java:146)
     at loci.plugins.in.Importer.showDialogs(Importer.java:141)
     at loci.plugins.in.Importer.run(Importer.java:79)
     at loci.plugins.LociImporter.run(LociImporter.java:81)
     at ij.IJ.runUserPlugIn(IJ.java:185)
     at ij.IJ.runPlugIn(IJ.java:152)
     at ij.Executer.runCommand(Executer.java:127)
     at ij.Executer.run(Executer.java:64)
     at java.lang.Thread.run(Thread.java:680)

Version information:

Bio-Formats version 11 March 2013
OS: Mac OS X 10.7.5
Java 1.6.0_43 (Apple Inc.)
ImageJ 1.47c


Non-working data:

These are some example Cellomics file names that I am importing.

NRT4517CX-CLIEN_130306150005i3t001A01f17d1.C01
through
NRT4517CX-CLIEN_130306150005i3t060A01f17d1.C01

60 files total


It seems like the expected file name format is not what is actually 
there (e.g.
with the '3t' in it).  If anyone can clue me in to the correct filename 
format
I would be very appreciative.


Thanks!
Dan

-- 
Dan Ruderman, Ph.D.
Assistant Professor of Research Medicine
Center for Applied Molecular Medicine
Keck School of Medicine of USC
Los Angeles, CA 90033

tel: 323 442 2839
fax: 323 442 2764
email: ruderman at usc.edu