[ome-users] Zeiss czi format problems
politi
politi at embl.de
Mon Jun 17 17:19:09 BST 2013
Dear Bioformats and Loci users,
I encounter problems if I try to read the time stamp and positional
information (stage information) of czi files generated from the ZEN
software (ZEN2010 and ZEN2012).
I can't retrieve the deltaT neither in the xml nor when using some of
the Loci tools or reading the metadata.
I attach one example image and a little macro. May be you can tell me
how to get this information out or what am I doing wrong.
Thanks
Antonio
EMBL Heidelberg
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Image2.czi
Type: application/octet-stream
Size: 73088 bytes
Desc: not available
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20130617/d0a97431/attachment.obj>
-------------- next part --------------
run("Close All")
run("Bio-Formats Macro Extensions");
Ext.openImagePlus("C:\\Users\\Antonio Politi\\Desktop\\Image2.czi");
Ext.setId("C:\\Users\\Antonio Politi\\Desktop\\Image2.czi");
//this function issues NAN
Ext.getPlanePositionX(positionX, 0);
print("PositionX " + positionX);
//this does not read in
Ext.getPlaneTimingDeltaT(deltaT, 0);
print("DeltaT " + deltaT);
//this works
Ext.getSizeX(sizeX);
print("SizeX " + sizeX);
Ext.getSizeT(sizeT);
print("SizeT " + sizeT);
More information about the ome-users
mailing list