[ome-users] Zeiss czi format problems

politi politi at embl.de
Mon Jun 17 17:19:09 BST 2013


Dear Bioformats and Loci users,
I encounter problems if I try to read the time stamp and positional 
information (stage information) of czi files generated from the ZEN 
software (ZEN2010 and ZEN2012).
I can't retrieve the deltaT neither in the xml nor when using some of 
the Loci tools or reading the metadata.

I attach one example image and a little macro. May be you can tell me 
how to get this information out or what am I doing wrong.


Thanks

Antonio
EMBL Heidelberg


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run("Close All")
run("Bio-Formats Macro Extensions");
Ext.openImagePlus("C:\\Users\\Antonio Politi\\Desktop\\Image2.czi");
Ext.setId("C:\\Users\\Antonio Politi\\Desktop\\Image2.czi");
//this function issues NAN
Ext.getPlanePositionX(positionX, 0);
print("PositionX " + positionX);
//this does not read in
Ext.getPlaneTimingDeltaT(deltaT, 0);
print("DeltaT " + deltaT);

//this works
Ext.getSizeX(sizeX);
print("SizeX " + sizeX);
Ext.getSizeT(sizeT);
print("SizeT " + sizeT);




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