[ome-users] MATLAB bfopen image series metadata issue

[Sebastien Besson]

Hi Thurston,

given a reader r, the way to retrieve the global metadata is:

r.getGlobalMetadata()

and the way to retrieve metadata per-series is:

r.setSeries(iSeries)
r.getSeriesMetadata()

I just tested bfopen() on a file where series metadata are expected to be different.
The function output resulted on non-identical hash tables.

Note however the way the series metadata is constructed is reader-specific.
In the current implementation of the DeltaVision reader, all series metadata are identical by construction.

If this is not the case and you are expecting different metadata per series, could you upload a sample file to:
http://qa.openmicroscopy.org.uk/qa/upload/

Cheers,
Sebastien

On 24 Jul 2013, at 00:27, Thurston Herricks wrote:

Hello,

I am using bfopen to load image sets from a deltavision microscope into MATLAB.  I am currently using MATLAB R2013a.

An issue has cropped up when multiple image series are in a single file.  In bfopen.m line 212, when r.getSeriesMetadata is called only the metadata from the last series is writen to the results.  When r.setSeries( index ) is changed, the metadata retrieved for rgetSeriesMetadata is identical for all indicies.

Is there another method for retrieving image meta data?

Thanks

Thurston Herricks
_______________________________________________
ome-users mailing list
ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users

Dr Sébastien Besson
Open Microscopy Environment / Harvard Medical School
Wellcome Trust Centre for Gene Regulation and Expression,
College of Life Sciences, University of Dundee, Dow Street,
Dundee DD1 5EH Scotland UK   Tel: (01382) 386364


The University of Dundee is a registered Scottish Charity, No: SC015096
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20130724/6a6c2c21/attachment.html>