[ome-users] Trouble with LOCI reader and Nikon Elements 4.10.01

[Melissa Linkert]

Hi Jonas,

As always, thank you for the bug report!

> It has been a while since I last complained about Nikon making a
> mess of everything. I hope you're still the right person to contact.

The ome-users mailing list (in CC) is the best place to ask Bio-Formats
questions.  I'm more than happy to answer questions, but asking there ensures
that someone else can answer your message even if I am away.

> We have recently updated to Nikon Element 4.10.01. The headers of
> images saved with this version are not correctly recognized by LOCI
> readers v 4.4.4, 4.4.6, or yesterday's daily build. It feels as if
> there was possibly a different offset of some sort that e.g. makes
> only one of the two pixel sizes in a 2D image appear properly. What
> is worse is that the movie dimensions are completely wrong, for
> example z/t/c 1/29/3 instead of 8/20/1.

Do you see the same behavior with the most recent stable version (4.4.8)?

> Can I upload a sample movie for you? Is there any additional
> information I can provide you with?

The best thing to do would be to upload a sample file to:

http://qa.openmicroscopy.org.uk/qa/upload/

and then we can debug accordingly.

Regards,
-Melissa

On Tue, Jul 23, 2013 at 05:44:52PM -0400, Jonas Dorn wrote:
> Dear Melissa,
> 
> It has been a while since I last complained about Nikon making a
> mess of everything. I hope you're still the right person to contact.
> 
> We have recently updated to Nikon Element 4.10.01. The headers of
> images saved with this version are not correctly recognized by LOCI
> readers v 4.4.4, 4.4.6, or yesterday's daily build. It feels as if
> there was possibly a different offset of some sort that e.g. makes
> only one of the two pixel sizes in a 2D image appear properly. What
> is worse is that the movie dimensions are completely wrong, for
> example z/t/c 1/29/3 instead of 8/20/1.
> 
> Can I upload a sample movie for you? Is there any additional
> information I can provide you with?
> 
> Best,
> Jonas