[ome-users] problem reading TIF images with 13.04.2

[Melissa Linkert]

Hi Mario,

> with a relatively recent snapshot of Bio-Formats, I have a problem decoding
> some MetaXpress TIFF images that used to work with older Bio-Formats. I don't
> know the precise version I tried, sorry. Attached is one such file that fails
> to read, even though MetaXpress claims the image should be ok, and older
> Bio-Formats happily reads the file as well.
> 
> Below is part of the error message that I recovered, I tried twice and got
> reproducibly twice the same error:

The file that was attached does open correctly for me using both 4.4.8 and the
most recent trunk build (537edb7, 23 July 2013).  Could you please confirm
whether either of those versions work for you as well?

Regards,
-Melissa

On Tue, Jul 23, 2013 at 02:02:21PM +0200, Mario Emmenlauer wrote:
> 
> Dear Bio-Formats Developers,
> 
> with a relatively recent snapshot of Bio-Formats, I have a problem decoding
> some MetaXpress TIFF images that used to work with older Bio-Formats. I don't
> know the precise version I tried, sorry. Attached is one such file that fails
> to read, even though MetaXpress claims the image should be ok, and older
> Bio-Formats happily reads the file as well.
> 
> Below is part of the error message that I recovered, I tried twice and got
> reproducibly twice the same error:
> 
> loci.formats.FormatException: java.io.EOFException: Attempting to read beyond
> end of file.
> 	at loci.formats.codec.BaseCodec.decompress(BaseCodec.java:188)
> 	at loci.formats.tiff.TiffCompression.decompress(TiffCompression.java:278)
> 	at loci.formats.tiff.TiffParser.getTile(TiffParser.java:699)
> 	at loci.formats.tiff.TiffParser.getSamples(TiffParser.java:878)
> 	at loci.formats.tiff.TiffParser.getSamples(TiffParser.java:739)
> 	at loci.formats.in.MinimalTiffReader.openBytes(MinimalTiffReader.java:292)
> 	at loci.formats.in.MetamorphTiffReader.openBytes(MetamorphTiffReader.java:120)
> 	at loci.formats.FormatReader.openBytes(FormatReader.java:781)
> 	at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:305)
> 	at loci.formats.gui.BufferedImageReader.openImage(BufferedImageReader.java:94)
> 	at loci.formats.gui.BufferedImageReader.openImage(BufferedImageReader.java:77)
> 	at
> [...]
> 
> 
> Thanks for any help, and cheers,
> 
>     Mario
> 
> 
> 
> 
> 
> 
> -- 
> Mario Emmenlauer, Dipl.Inf.                  Office: +41-(0)61-26-72110
> Biozentrum Basel
> Klingelbergstrasse 50/70           mailto: mario.emmenlauer * unibas.ch
> CH-4056 Basel                     http://infectx.org/about_us/emmenlau/
> 
> 


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