[ome-users] bug report opening *sld file

[Melissa Linkert]

Hi Kai,

> I wanted to import an *.sld file but got the following error msg
> when loading loci_plugins-4.4.9-SNAPSHOT:
> 
> (Fiji Is Just) ImageJ 1.47v; Java 1.6.0_24 [64-bit]; Windows 7 6.1;
> 27MB of 11935MB (<1%)
> 
> java.lang.ArrayIndexOutOfBoundsException: Array index out of range: 0
>     at java.util.Vector.get(Vector.java:694)
>     at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:648)
>     at loci.formats.FormatReader.setId(FormatReader.java:1183)

Thank you for the bug report.

> The datafile is 350 MB, so I'd have to upload it to the FTP.

Could you please upload the file to the OME QA system:

http://qa.openmicroscopy.org.uk/qa/upload/

If that doesn't work, please let me know and I will send alternate
instructions.

Regards,
-Melissa

On Fri, Jul 19, 2013 at 09:25:52AM +0200, Kai Schleicher wrote:
> Hello,
> 
> I wanted to import an *.sld file but got the following error msg
> when loading loci_plugins-4.4.9-SNAPSHOT:
> 
> (Fiji Is Just) ImageJ 1.47v; Java 1.6.0_24 [64-bit]; Windows 7 6.1;
> 27MB of 11935MB (<1%)
> 
> java.lang.ArrayIndexOutOfBoundsException: Array index out of range: 0
>     at java.util.Vector.get(Vector.java:694)
>     at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:648)
>     at loci.formats.FormatReader.setId(FormatReader.java:1183)
>     at
> loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:482)
>     at loci.plugins.in.ImportProcess.execute(ImportProcess.java:146)
>     at loci.plugins.in.Importer.showDialogs(Importer.java:141)
>     at loci.plugins.in.Importer.run(Importer.java:79)
>     at loci.plugins.LociImporter.run(LociImporter.java:81)
>     at ij.IJ.runUserPlugIn(IJ.java:195)
>     at ij.IJ.runPlugIn(IJ.java:160)
>     at ij.IJ.runPlugIn(IJ.java:149)
>     at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:421)
>     at HandleExtraFileTypes.run(HandleExtraFileTypes.java:57)
>     at ij.IJ.runUserPlugIn(IJ.java:195)
>     at ij.IJ.runPlugIn(IJ.java:160)
>     at ij.IJ.runPlugIn(IJ.java:149)
>     at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:438)
>     at ij.io.Opener.openImage(Opener.java:310)
>     at ij.io.Opener.openImage(Opener.java:333)
>     at ij.io.Opener.open(Opener.java:143)
>     at ij.io.Opener.openAndAddToRecent(Opener.java:246)
>     at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:176)
>     at ij.plugin.DragAndDrop.run(DragAndDrop.java:152)
>     at java.lang.Thread.run(Thread.java:662)
> 
> The datafile is 350 MB, so I'd have to upload it to the FTP.
> 
> Thank you.
> 
> Kind Regards,
> Kai Schleicher
> 
> -- 
> Kai Schleicher
> Biozentrum
> University of Basel
> Klingelbergstr. 50/70
> CH-4056 Basel
> Switzerland
> 
> tel: +41 61 267 2108
> e-mail: kai.schleicher at unibas.ch
> 
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