[ome-users] slow or failing import of large files with large X by Y size

[Petr Walczysko]

Hello Damir

Thank you very much for your feedback.
Could you please upload the files in question using out QA ?
Please go to
http://qa.openmicroscopy.org.uk/qa/upload/
and follow the instructions.
It would help us to investigate the problem.
Thank you
All the best
Petr



On 23 Feb 2013, at 01:16, Damir Sudar <dsudar at lbl.gov<mailto:dsudar at lbl.gov>>
 wrote:

Hi all,

On my installation (Omero 4.4.5/Ice 3.4 on Ubuntu 12.04LTS 64-bit) I see the following strange import (using Insight/Importer 4.4.5) behavior:
File1.lsm: 102MB is 5120 by 5120 pixels in 2 channels takes 30-40 minutes to import
File2.lsm: 207MB  is 1024 by 1024 pixels by 50 Z-slices takes 1 minute to import
File3.tif: 100MB  is 10240 by 10240 pixels simple 8-bit TIFF, import finishes in a few seconds without errors but the resulting image in Omero will not open and gives error: "The image could not be opened. The image is not a valid image." But the archived version can be downloaded without trouble.

So there appears to be something wrong with importing image with large X by Y sizes. Has anyone seen this as well and is there a solution?

Thanks,
- Damir

--
Damir Sudar - Staff Scientist and Deputy for Technology
Lawrence Berkeley Laboratory / Life Sciences Division
One Cyclotron Road, MS 977, Berkeley, CA 94720, USA
T: 510/486-5346 - F: 510/486-5586 - E: DSudar at lbl.gov<mailto:DSudar at lbl.gov>
WWW: http://www.lbl.gov/lsd/People_&_Organization/Scientific_Staff_Directory/Sudar_Lab.html

_______________________________________________
ome-users mailing list
ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users



The University of Dundee is a registered Scottish Charity, No: SC015096
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20130225/3de05e9b/attachment.html>