[ome-users] [Software Feedback] LOCI plugin bug

[Melissa Linkert]

Hi Paul,

> I've now tried to open an ics file generated by LOCI using the SLIM plugin (Lifetime) and got the same exceptions. (All with the most up-to-date version of Fiji.)

The error message sent previously would only occur when writing an ICS
file.  Could you please double-check that your Fiji is completely up to
date, and then send the complete error message that you see when reading
the ICS file created by the SLIM plugin?

Regards,
-Melissa

On Wed, Feb 20, 2013 at 09:19:57AM +0000, Paul Thomas (BIO) wrote:
> I've now tried to open an ics file generated by LOCI using the SLIM plugin (Lifetime) and got the same exceptions. (All with the most up-to-date version of Fiji.)
> Paul
> 
> ____________________
> Dr. Paul Thomas, Director,
> The Henry Wellcome Laboratory for Cell Imaging,
> School of Biological Sciences,
> University of East Anglia,
> Norwich Research Park,
> Norwich,
> NR4 7TJ,
> United Kingdom.
> 
> e-mail: p.thomas at uea.ac.uk
> Tel: +44-1603-592196
> Fax: +44-1603-592250
> Imaging web-site: http://www.uea.ac.uk/biological-sciences/research/facilities/henry-wellcome-lab
> Personal web-page: http://biobis.bio.uea.ac.uk/biosql/fac_show.aspx?ID=548
> 
> From: ome-users-bounces at lists.openmicroscopy.org.uk [mailto:ome-users-bounces at lists.openmicroscopy.org.uk] On Behalf Of Curtis Rueden
> Sent: 19 February 2013 19:39
> To: daniel.martins at oncology.ox.ac.uk
> Cc: OME-users mailing list
> Subject: Re: [ome-users] [Software Feedback] LOCI plugin bug
> 
> Hi Daniel,
> 
> > When you export a time series let's assume with 5 time points, the
> > first time point is exported correctly, but then the following ones
> > have an issue.
> 
> Please update your Fiji to the latest version (Help > Update Fiji) and try again. If the problem still occurs, let us know. In that case though, we may need a test file or macro; you can upload one using the Help > Upload Sample Image command if needed.
> 
> Regards,
> Curtis
> 
> 
> On Tue, Feb 12, 2013 at 10:14 AM, <daniel.martins at oncology.ox.ac.uk<mailto:daniel.martins at oncology.ox.ac.uk>> wrote:
> Dear all, I have been using your LOCI plugin to export some ics/ids time-series stacks using FIJI. I have noticed there is a bug on this feature. When you export a time series let's assume with 5 time points, the first time point is exported correctly, but then the following ones have an issue. For example time-point 3 instead of being exported as a single frame, is exported as an ics stack with 3 frames, 2 empty frames and the last one is the actual single frame you would want to be exported to begin with. In summary, each time-point is exported as a stack with a number of frames equal to the time point number. This bug only seems to occur for ics files. If you could help me and look into this it would be greatly appreciated.
> 
> All the  best,
> 
> Daniel Martins
> 

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