[ome-users] Fwd: bug in ImageJ LOCI plugin?

[Curtis Rueden]

---------- Forwarded message ----------
From: Christian Liebig <christian.liebig at medizin.uni-tuebingen.de>
Date: Tue, Oct 30, 2012 at 5:07 AM
Subject: bug in ImageJ LOCI plugin?
To: Curtis Rueden <ctrueden at wisc.edu>


Dear Curtis,

I hope you're the right person to contact. I'm trying to export an .lsm
file which contains 28 z-planes of 256x256 pixels, 3 channels and 10
timepoints using the Bioformats exporter. I check the options for
separatingn the channels and time points but not the z-planes. I save in
uncompressed format. After some files get created I always get the attached
exception and the export stops.
I'm working on a 32-bit Windows 7 machine. The problem occurs with Fiji and
MBF ImageJ, both euipped with the latest stable release of the LOCI plugins.

Please let me know if you need the .lsm file in question, it is about 68MB.

Thanks in advance for your help, kind regards,

Christian
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java.lang.reflect.InvocationTargetException

	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)

	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)

	at java.lang.reflect.Method.invoke(Method.java:597)

	at ij.Command.runPlugIn(Command.java:146)

	at ij.Command.runCommand(Command.java:95)

	at ij.Executer.run(Executer.java:64)

	at java.lang.Thread.run(Thread.java:662)

Caused by: java.lang.ArrayIndexOutOfBoundsException: 30

	at loci.plugins.out.Exporter.run(Exporter.java:547)

	at loci.plugins.LociExporter.run(LociExporter.java:77)

	at ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:256)

	at ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:105)

	at ij.IJ.runUserPlugIn(IJ.java:187)

	at ij.IJ.runPlugIn(IJ.java:152)

	... 8 more