[ome-users] OMERO.server4.4.4 Settings Configuration (Could not import omero.cli! No module named Ice)
UNAI LORENZO SIERRA
ulorenzo001 at ikasle.ehu.es
Fri Nov 23 15:55:47 GMT 2012
Hi Josh,
Since I was having problems with all the permissions I uninstalled all
the prerequisites and, after that, installed them again as an
administrator.
I believe that something went wrong, because I can't populate the
database using SQL Shell:
Server [localhost]:
Database [postgres]: omero_database
Port [5432]:
Username [postgres]: db_user
Contrase±a para usuario db_user:
psql (9.2.1)
ADVERTENCIA: El código de página de la consola (850) difiere del código
de página de Windows (1252).
Los caracteres de 8 bits pueden funcionar incorrectamente.
Vea la página de referencia de psql «Notes for Windows users»
para obtener más detalles.
Digite «help» para obtener ayuda.
omero_database=> \i O:\omero_dist\OMERO4.4__0.sql
O:: Invalid argument
This is the otput of 'admin diagnostics':
O:\omero_dist>bin\omero admin diagnostics
================================================================================
OMERO Diagnostics 4.4.4-ice34-b3099
================================================================================
WARNING:omero.util.UpgradeCheck:UPGRADE AVAILABLE:Please upgrade to
4.4.5 See ht
tp://trac.openmicroscopy.org.uk/omero for the latest version
Commands: java -version 1.7.0
(C:\Windows\system32\java.E
XE)
Commands: python -V 2.6.6 (C:\Python26\python.EXE)
Commands: icegridnode --version 3.4.2 (C:\Program
Files\ZeroC\Ice
-3.4.2\bin\icegridnode.EXE)
Commands: icegridadmin --version 3.4.2 (C:\Program
Files\ZeroC\Ice
-3.4.2\bin\icegridadmin.EXE)
Commands: psql --version not found
Server: icegridnode not started
Log dir: O:\omero_dist\var\log exists
Log files: Blitz-0.log n/a
Log files: DropBox.log n/a
Log files: FileServer.log n/a
Log files: Indexer-0.log n/a
Log files: MonitorServer.log n/a
Log files: OMEROweb.log n/a
Log files: Processor-0.log n/a
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: Total size 0.00 MB
Error while parsing logs
Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:PATH=C:\Python26;C:\Program
Files\PHP\;C:\Windows\system32;C:\Window
s;C:\Windows\System32\Wbem;C:\Program
Files\Intel\DMIX;C:\Windows\System32\Windo
ws System Resource Manager\bin;C:\Program Files\MySQL\MySQL Server
5.1\bin;C:\Pr
ogram Files\Panda
Security\WaAgent\Common;C:\Windows\System32\WindowsPowerShell\
v1.0\;C:\Windows\system32\cmd.exe;C:\Program Files\ZeroC\Ice-3.4.2\bin;
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)
OMERO data dir: 'P:\OMERO' Exists? True Is writable? True
OMERO.web status... [NOT STARTED]
Thanks again,
Unai
Josh Moore <josh at glencoesoftware.com> escribió:
> On Nov 23, 2012, at 10:42 AM, UNAI LORENZO SIERRA wrote:
>>
>> Dear Josh,
>
> Hi Unai,
>
>> Please find attached the screenshots of the security settings.
>> My username is AdmOmero (the one I selected in both screenshots).
>
> I think I've tracked down the source of the confusion. Our Windows
> documentation [1] doesn't make it clear that the process is launched
> as "LocalService" therefore the permissions you've configured do not
> suffice. You can see either of these threads for more discussion of
> the issue:
>
> * https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=424#p1219
>
> * https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=436&start=10
>
> Sorry for the hassle!
> ~Josh.
>
> [1]
> https://www.openmicroscopy.org/site/support/omero4/sysadmins/windows/server-binary-repository.html#permissions
> [2] https://trac.openmicroscopy.org.uk/ome/ticket/9938
>
>> Cheers,
>> Unai
>>
>>
>> Josh Moore <josh at glencoesoftware.com> escribió:
>>
>>>
>>> On Nov 23, 2012, at 9:59 AM, UNAI LORENZO SIERRA wrote:
>>>
>>>> Hi Josh,
>>>
>>> Hi.
>>>
>>>> This is the output of 'bin\omero admin diagnostics':
>>>>
>>>>
>>>> O:\omero_dist>bin\omero admin diagnostics
>>>>
>>>> ================================================================================
>>>>
>>>> OMERO Diagnostics 4.4.4-ice34-b3099
>>>> ================================================================================
>>>>
>>>>
>>>> WARNING:omero.util.UpgradeCheck:UPGRADE AVAILABLE:Please upgrade
>>>> to 4.4.5 See ht
>>>> tp://trac.openmicroscopy.org.uk/omero for the latest version
>>>>
>>>> Commands: java -version 1.7.0
>>>> (C:\Windows\system32\java.E
>>>> XE)
>>>> Commands: python -V 2.6.6
>>>> (C:\Python26\python.EXE)
>>>> Commands: icegridnode --version 3.4.2 (C:\Program
>>>> Files\ZeroC\Ice
>>>> -3.4.2\bin\icegridnode.EXE)
>>>> Commands: icegridadmin --version 3.4.2 (C:\Program
>>>> Files\ZeroC\Ice
>>>> -3.4.2\bin\icegridadmin.EXE)
>>>> Commands: psql --version not found
>>>>
>>>> Server: icegridnode not started
>>>>
>>>> Log dir: O:\omero_dist\var\log exists
>>>>
>>>> Log files: Blitz-0.log n/a
>>>> Log files: DropBox.log n/a
>>>> Log files: FileServer.log n/a
>>>> Log files: Indexer-0.log n/a
>>>> Log files: MonitorServer.log n/a
>>>> Log files: OMEROweb.log n/a
>>>> Log files: Processor-0.log n/a
>>>> Log files: Tables-0.log n/a
>>>> Log files: TestDropBox.log n/a
>>>> Log files: Total size 0.00 MB
>>>>
>>>> Error while parsing logs
>>>>
>>>> Environment:OMERO_HOME=(unset)
>>>> Environment:OMERO_NODE=(unset)
>>>> Environment:OMERO_MASTER=(unset)
>>>> Environment:PATH=C:\Windows\system32\cmd.exe;C:\Program
>>>> Files\ZeroC\Ice-3.4.2\bi
>>>> n;C:\Python26;C:\Program
>>>> Files\PHP\;C:\Windows\system32;C:\Windows;C:\Windows\Sy
>>>> stem32\Wbem;C:\Program
>>>> Files\Intel\DMIX;C:\Windows\System32\Windows System Resou
>>>> rce Manager\bin;C:\Program Files\MySQL\MySQL Server
>>>> 5.1\bin;C:\Program Files\Pan
>>>> da
>>>> Security\WaAgent\Common;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Window
>>>> s\system32\cmd.exe
>>>> Environment:ICE_HOME=(unset)
>>>> Environment:LD_LIBRARY_PATH=(unset)
>>>> Environment:DYLD_LIBRARY_PATH=(unset)
>>>>
>>>> OMERO data dir: 'P:\OMERO' Exists? True Is writable? True
>>>> OMERO.web status... [NOT STARTED]
>>>>
>>>>
>>>> I can't send you the var\log file because it doesn't exist.
>>>
>>> Understood. Could you provide us with a screenshot of the
>>> directory security settings for both P:\OMERO and O:\omero_dist?
>>>
>>> Thanks,
>>> ~Josh.
>>>
>>>
>>>> Please, do not hesitate to ask me about any kind of information
>>>> in case you need it.
>>>>
>>>> Thanks,
>>>> Unai
>>>>
>>>>
>>>> Josh Moore <josh at glencoesoftware.com> escribió:
>>>>
>>>>>
>>>>> On Nov 20, 2012, at 1:24 PM, UNAI LORENZO SIERRA wrote:
>>>>>> Dear Blazej,
>>>>>
>>>>> Hi Unai,
>>>>>
>>>>>> Sorry for the delay answering your email.
>>>>>> I changed all the permissions and now I'm the system administrator.
>>>>>> But I'm still having problems with 'omero admin start'.
>>>>>>
>>>>>> Could you please take a look at the command line?
>>>>>>
>>>>>>
>>>>>> O:\omero_dist>bin\omero admin start
>>>>>> No descriptor given. Using etc\grid\windefault.xml
>>>>>> [SC] StartService ERROR 1053:
>>>>>>
>>>>>> El servicio no respondió a tiempo a la solicitud de inicio o de control.
>>>>>>
>>>>>>
>>>>>> Waiting on startup. Use CTRL-C to exit
>>>>>> .
>>>>>>
>>>>>>
>>>>>> (The service didn't respond on time to the start request)
>>>>>
>>>>> After this latest attempt, could you again send us the output of
>>>>> bin\omero admin diagnostics and the contents of var\log? One
>>>>> other thing to check is if your previous attempts didn't leave a
>>>>> process running. We usually use Process Explorer ("procexp.exe")
>>>>> available here
>>>>> http://technet.microsoft.com/en-us/sysinternals/bb896653. I've
>>>>> taken a screenshot of a healthy OMERO installation here:
>
>
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