[ome-users] metadata in Nikon nd2 files

[Melissa Linkert]

Hi Christian,

> > I've tried the "trunk" build. It fixes the swapping between z and t
> > but the correct voxel depths is still missing (again it only shows
> > 1.0).
> 
> Well, that's progress at least.  Would you be willing to send a small
> file that demonstrates the voxel depth issue?  I haven't been able to
> duplicate it so far with the files that I have here.

Thank you for uploading a file, and my apologies for not replying
sooner.

The problem is now fixed, as noted here:

https://github.com/melissalinkert/bioformats/commit/8469c59b8e41ce3f825b11922a88e28c251f4e2b

The upcoming 4.4.3 version will contain this fix.

Regards,
-Melissa

On Wed, Aug 22, 2012 at 07:09:41PM -0400, Melissa Linkert wrote:
> Hi Christian,
> 
> > I've tried the "trunk" build. It fixes the swapping between z and t
> > but the correct voxel depths is still missing (again it only shows
> > 1.0).
> 
> Well, that's progress at least.  Would you be willing to send a small
> file that demonstrates the voxel depth issue?  I haven't been able to
> duplicate it so far with the files that I have here.
> 
> It is probably easiest to upload the file directly from Fiji ("Help >
> Upload Sample"), but if that doesn't work please let me know.
> 
> > Do you know when version 4.4.3 will be released?
> 
> We're currently targeting 15 September.
> 
> Regards,
> -Melissa
> 
> On Wed, Aug 22, 2012 at 06:26:17PM +0200, Christian Wenzl wrote:
> > Hi Melissa,
> > 
> > I've tried the "trunk" build. It fixes the swapping between z and t
> > but the correct voxel depths is still missing (again it only shows
> > 1.0). Do you know when version 4.4.3 will be released?
> > 
> > Cheers,
> > Christian.
> > 
> > Am 22.08.2012 17:00, schrieb Melissa Linkert:
> > >Hi Christian,
> > >
> > >This was a known problem, which was recently fixed and so should be
> > >working with the upcoming 4.4.3 release of Bio-Formats.  You can also
> > >try the "trunk" build (from http://loci.wisc.edu/bio-formats/downloads),
> > >but note that if you have recently updated Fiji you will need to
> > >download all of the files in the "Trunk build" column under the
> > >"Bio-Formats component builds" section.
> > >
> > >Regards,
> > >-Melissa
> > >
> > >
> > ,