[ome-users] SVS file format functionality problem

[Kim Linton]

Hi Will,

Thanks for looking into this issue for us. So all the functionality is
there i.e. it will load all the images but it is very slow. It says in the
log that it will be fixed in Version 5.0. Is there an approximate timeframe
for this?

Thanks for your help,

Kim Linton

On 11 November 2011 21:13, Will Moore <will at lifesci.dundee.ac.uk> wrote:

> Hi Leon,
>
>  The file seems to import OK, except for the largest of the 7 images. 95k
> x 45k (see screen-shots).
>
> The largest image doesn't import - This is a known issue:
> http://trac.openmicroscopy.org.uk/ome/ticket/6500
> "SizeX * SizeY exceeds Integer.MAX_VALUE."
>
> When we give you the warning "Please try again later", this is when the
> image pyramids are being built on the server. Just takes time.
>
>
>   Will.
>
>
>
> On 11 Nov 2011, at 00:54, Leon Kolchinsky wrote:
>
> Hello,
>
> We're trying to use .svs files with OMERO (latest 4.3.3 version)
> and experiencing some issues with that.
>
> When .svs file uploaded via "Insight" it appears in the client as
> following -  (checkout the screenshot )
>  It should look like this - (checkout screenshot svs thumbnail.tiff<https://mail.google.com/mail/?ui=2&ik=c2449854ef&view=att&th=133901bdcecab120&attid=0.1&disp=safe&realattid=f_guugh9y10&zw>
> ).
>
> Can you please test it and tell us how to fix the problem?
>
> Sample .svs file provided here -
> https://cloudstor.aarnet.edu.au/filesender/?vid=99FF5385-A079-29C7-3B5D-90178BFC6ED7
>
> Thanks,
> Leon Kolchinsky
>
>
>
> ---------- Forwarded message ----------
> From: Kim Linton <kim.linton at monash.edu>
> Date: Fri, Nov 11, 2011 at 11:44
> Subject: OMERO - SVS file format functionality
> To: Leon Kolchinsky <leon.kolchinsky at monash.edu>
>
>
> he Rendering Engine. Image not ready. Please try again later.' I also get
> an error message when trying to view the image in Image J via the OMERO
> plugin. I have tried loading the file including archive and without.
>
> Attached is a the thumbnail of the image.
>
> <svs thumbnail.tiff><2011-11-11_115031.jpg>
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-- 
  Kim Linton
Senior Research Systems Facilitator
Monash e-Research Centre
Building 75
Monash University
Clayton Victoria 3800, Australia
Ph:      +61 3 99020712
Fax:    +61 3 9902-0193
Email:  kim.linton at monash.edu
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Part time: Mon, Tues, Thurs & Fri
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