[ome-users] SVS file format functionality problem

[Will Moore]

Hi Leon,

 The file seems to import OK, except for the largest of the 7 images. 95k x 45k (see screen-shots). 

The largest image doesn't import - This is a known issue: http://trac.openmicroscopy.org.uk/ome/ticket/6500 
"SizeX * SizeY exceeds Integer.MAX_VALUE."

When we give you the warning "Please try again later", this is when the image pyramids are being built on the server. Just takes time. 


  Will. 




On 11 Nov 2011, at 00:54, Leon Kolchinsky wrote:

> Hello,
> 
> We're trying to use .svs files with OMERO (latest 4.3.3 version) and experiencing some issues with that.
> 
> When .svs file uploaded via "Insight" it appears in the client as following -  (checkout the screenshot )
> It should look like this - (checkout screenshot svs thumbnail.tiff).
> 
> Can you please test it and tell us how to fix the problem?
> 
> Sample .svs file provided here - https://cloudstor.aarnet.edu.au/filesender/?vid=99FF5385-A079-29C7-3B5D-90178BFC6ED7
> 
> Thanks,
> Leon Kolchinsky
> 
> 
> 
> ---------- Forwarded message ----------
> From: Kim Linton <kim.linton at monash.edu>
> Date: Fri, Nov 11, 2011 at 11:44
> Subject: OMERO - SVS file format functionality
> To: Leon Kolchinsky <leon.kolchinsky at monash.edu>
> 
> 
> he Rendering Engine. Image not ready. Please try again later.' I also get an error message when trying to view the image in Image J via the OMERO plugin. I have tried loading the file including archive and without.
> 
> Attached is a the thumbnail of the image.
> 
> <svs thumbnail.tiff><2011-11-11_115031.jpg>_______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users

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