[ome-users] Another newbie question - why won't Omero web come up?
Taylor, Ronald C
ronald.taylor at pnl.gov
Wed May 12 00:00:56 BST 2010
Hello,
In addition to my problem about the Omero Java client not coming up (see separate, earlier email), I also cannot get the Omero web server to come up on port 8000 on my desktop (sidney.pnl.gov). So I could also use some help with that.
Omero web settings were set like so - which appeared to work fine:
sidney85% omero web settings
Please enter the domain you want to run OMERO.web on (http://www.domain.com:8000/):http://sidney.pnl.gov:8000
Please enter the Email address you want to send from (omero_admin at example.com): ronald.taylor at pnl.gov Please enter the SMTP server host you want to send from (smtp.example.com): mailhost.emsl.pnl.gov
Optional: please enter the SMTP server port (default 25):
Optional: Please enter the SMTP server username:
Optional: Password:
Optional: TSL? (yes/no):
Saved to /sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/custom_settings.py
Please enter Username for OMERO.web administrator: rtaylor Please enter Email address: ronald.taylor at pnl.gov Please enter password for OMERO.web administrator: r*****9
Please re-enter password for OMERO.web administrator: r*****9
<string>:36: DeprecationWarning: the sha module is deprecated; use the hashlib module instead Saved to /sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/initial_data.json
Database synchronization...
Creating table django_admin_log
Creating table auth_permission
Creating table auth_group
Creating table auth_user
Creating table auth_message
Creating table django_content_type
Creating table django_session
Creating table django_site
Creating table feedback_emailtemplate
Creating table webadmin_gateway
Installing index for admin.LogEntry model Installing index for auth.Permission model Installing index for auth.Message model Installing json fixture 'initial_data' from absolute path.
Installed 2 object(s) from 1 fixture(s)
OMERO.web was configured successful. Please start the application.
sidney86%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
I next invoked ICE and started the OMERO web server, like so:
sidney294% omero admin ice
Ice 3.4.0 Copyright 2003-2010 ZeroC, Inc.
>>> server enable web
error: couldn't find server `web'
>>>
>>> server enable Web
>>>
>>> server start Web
>>>
>>> server state Web
active (pid = 7269, enabled)
>>>
>>> exit
sidney295%
sidney295%
That appeared to work OK, too. I also checked on port 8000 - it is open.
However, when I point my browser to
http://sidney.pnl.gov:8000
My browser says that it connot connect. What is going wrong?
- Ron Taylor
PS - Though I gave the results of a "omero adimin diagnostics" run in the earlier email, I repeat it here at bottom for easy reference.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Diagnostic run:
sidney87% omero admin diagnostics
================================================================================
OMERO Diagnostics Beta-4.1.1-r5927-b91
================================================================================
Commands: java -version 1.6.0 (/msrc/apps/jdk_1.6/bin/java -- 2 others)
Commands: python -V 2.6.5 (/sid/Omero/Python/bin/python -- 2 others)
Commands: icegridnode --version 3.4.0 (/sid/Omero/Ice/Ice-3.4.0/bin/icegridnode)
Commands: icegridadmin --version 3.4.0 (/sid/Omero/Ice/Ice-3.4.0/bin/icegridadmin)
Commands: psql --version 8.3.10 (/sid/Omero/Postgres/8.3/bin/psql)
Server: icegridnode running
Server: Blitz-0 active (pid = 7016, enabled)
Server: DropBox inactive (disabled)
Server: FSServer active (pid = 7029, enabled)
Server: Indexer-0 active (pid = 7031, enabled)
Server: OMERO.Glacier2 active (pid = 7034, enabled)
Server: OMERO.IceStorm inactive (disabled)
Server: Processor-0 inactive (disabled)
Server: Tables-0 inactive (disabled)
Server: TestDropBox inactive (enabled)
Server: Web active (pid = 7774, enabled)
Log dir: /sid/Omero/Omero_install/omero_dist/var/log exists
Log files: Blitz-0.log 44.0 KB errors=2 warnings=34
Log files: DropBox.log n/a
Log files: FSServer.log 2.0 KB errors=0 warnings=12
Log files: Indexer-0.log 3.0 KB errors=0 warnings=2
Log files: OMEROweb.log 0.0 KB
Log files: OMEROweb.log.2010-05-11 0.0 KB
Log files: Processor-0.log n/a
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: master.err 6.0 KB errors=0 warnings=4
Log files: master.out 0.0 KB
Log files: Total size 0.06 MB
sidney88%
I also set the Omero web parameters, like so:
sidney85% omero web settings
Please enter the domain you want to run OMERO.web on (http://www.domain.com:8000/):http://sidney.pnl.gov:8000
Please enter the Email address you want to send from (omero_admin at example.com): ronald.taylor at pnl.gov Please enter the SMTP server host you want to send from (smtp.example.com): mailhost.emsl.pnl.gov
Optional: please enter the SMTP server port (default 25):
Optional: Please enter the SMTP server username:
Optional: Password:
Optional: TSL? (yes/no):
Saved to /sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/custom_settings.py
Please enter Username for OMERO.web administrator: rtaylor
Please enter Email address: ronald.taylor at pnl.gov
Please enter password for OMERO.web administrator: r*****9
Please re-enter password for OMERO.web administrator: r*****9
<string>:36: DeprecationWarning: the sha module is deprecated; use the hashlib module instead
Saved to /sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/initial_data.json
Database synchronization...
Creating table django_admin_log
Creating table auth_permission
Creating table auth_group
Creating table auth_user
Creating table auth_message
Creating table django_content_type
Creating table django_session
Creating table django_site
Creating table feedback_emailtemplate
Creating table webadmin_gateway
Installing index for admin.LogEntry model Installing index for auth.Permission model Installing index for auth.Message model Installing json fixture 'initial_data' from absolute path.
Installed 2 object(s) from 1 fixture(s)
OMERO.web was configured successful. Please start the application.
sidney86%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
___________________________________________
Ronald Taylor, Ph.D.
Computational Biology & Bioinformatics Group
Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999, Mail Stop J4-33
Richland, WA 99352 USA
Office: 509-372-6568
Email: ronald.taylor at pnl.gov
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