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<div><font face="Arial, sans-serif" size="2">Hello,</font></div>
<div><font face="Arial, sans-serif" size="2"> </font></div>
<div><font face="Arial, sans-serif" size="2">In addition to my problem about the Omero Java client not coming up (see separate, earlier email), I also cannot get the Omero web server to come up on port 8000 on my desktop (sidney.pnl.gov). So I could also use
some help with that. </font></div>
<div><font face="Arial, sans-serif" size="2"> </font></div>
<div><font face="Arial, sans-serif" size="2">Omero web settings were set like so - which appeared to work fine:</font></div>
<div><font face="Arial, sans-serif" size="2"> </font></div>
<div><font face="Courier New, monospace">sidney85% omero web settings</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Please enter the domain you want to run OMERO.web on (<a href="http://www.domain.com:8000/):http://sidney.pnl.gov:8000"><font color="#0000FF"><u>http://www.domain.com:8000/):http://sidney.pnl.gov:8000</u></font></a></font></div>
<div><font face="Courier New, monospace">Please enter the Email address you want to send from (omero_admin@example.com): ronald.taylor@pnl.gov Please enter the SMTP server host you want to send from (smtp.example.com): mailhost.emsl.pnl.gov</font></div>
<div><font face="Courier New, monospace">Optional: please enter the SMTP server port (default 25): </font></div>
<div><font face="Courier New, monospace">Optional: Please enter the SMTP server username: </font></div>
<div><font face="Courier New, monospace">Optional: Password: </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Optional: TSL? (yes/no): </font></div>
<div><font face="Courier New, monospace">Saved to /sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/custom_settings.py</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Please enter Username for OMERO.web administrator: rtaylor Please enter Email address: ronald.taylor@pnl.gov Please enter password for OMERO.web administrator: r*****9</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Please re-enter password for OMERO.web administrator: r*****9</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace"><string>:36: DeprecationWarning: the sha module is deprecated; use the hashlib module instead Saved to /sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/initial_data.json</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Database synchronization...</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Creating table django_admin_log</font></div>
<div><font face="Courier New, monospace">Creating table auth_permission</font></div>
<div><font face="Courier New, monospace">Creating table auth_group</font></div>
<div><font face="Courier New, monospace">Creating table auth_user</font></div>
<div><font face="Courier New, monospace">Creating table auth_message</font></div>
<div><font face="Courier New, monospace">Creating table django_content_type</font></div>
<div><font face="Courier New, monospace">Creating table django_session</font></div>
<div><font face="Courier New, monospace">Creating table django_site</font></div>
<div><font face="Courier New, monospace">Creating table feedback_emailtemplate</font></div>
<div><font face="Courier New, monospace">Creating table webadmin_gateway</font></div>
<div><font face="Courier New, monospace">Installing index for admin.LogEntry model Installing index for auth.Permission model Installing index for auth.Message model Installing json fixture 'initial_data' from absolute path.</font></div>
<div><font face="Courier New, monospace">Installed 2 object(s) from 1 fixture(s)</font></div>
<div><font face="Courier New, monospace">OMERO.web was configured successful. Please start the application.</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">sidney86% </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">I next invoked ICE and started the OMERO web server, like so:</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">sidney294% omero admin ice</font></div>
<div><font face="Courier New, monospace">Ice 3.4.0 Copyright 2003-2010 ZeroC, Inc.</font></div>
<div><font face="Courier New, monospace">>>> server enable web</font></div>
<div><font face="Courier New, monospace">error: couldn't find server `web'</font></div>
<div><font face="Courier New, monospace">>>> </font></div>
<div><font face="Courier New, monospace">>>> server enable Web</font></div>
<div><font face="Courier New, monospace">>>> </font></div>
<div><font face="Courier New, monospace">>>> server start Web</font></div>
<div><font face="Courier New, monospace">>>> </font></div>
<div><font face="Courier New, monospace">>>> server state Web</font></div>
<div><font face="Courier New, monospace">active (pid = 7269, enabled)</font></div>
<div><font face="Courier New, monospace">>>> </font></div>
<div><font face="Courier New, monospace">>>> exit</font></div>
<div><font face="Courier New, monospace">sidney295% </font></div>
<div><font face="Courier New, monospace">sidney295% </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Arial, sans-serif" size="2">That appeared to work OK, too. I also checked on port 8000 - it is open.</font></div>
<div><font face="Arial, sans-serif" size="2"> </font></div>
<div><font face="Arial, sans-serif" size="2">However, when I point my browser to</font></div>
<div><font face="Arial, sans-serif" size="2"> </font></div>
<div><font face="Arial, sans-serif" size="2"> <a href="http://sidney.pnl.gov:8000"><font color="#0000FF"><u>http://sidney.pnl.gov:8000</u></font></a></font></div>
<div><font face="Arial, sans-serif" size="2" color="#0000FF"> </font></div>
<div><font face="Arial, sans-serif" size="2" color="#0000FF">My browser says that it connot connect. What is going wrong?</font></div>
<div><font face="Arial, sans-serif" size="2" color="#0000FF"> </font></div>
<div><font face="Arial, sans-serif" size="2" color="#0000FF"> - Ron Taylor</font></div>
<div><font face="Arial, sans-serif" size="2" color="#0000FF"> </font></div>
<div><font face="Arial, sans-serif" size="2" color="#0000FF">PS - <font color="#000000">Though I gave the results of a "omero adimin diagnostics" run in the earlier email, I repeat it here at bottom for easy reference. </font></font></div>
<div><font face="Arial, sans-serif" size="2" color="#0000FF"> </font></div>
<div><font face="Arial, sans-serif" size="2" color="#0000FF"> </font></div>
<div><font face="Arial, sans-serif" size="2" color="#0000FF">%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%</font></div>
<div><font face="Arial, sans-serif" size="2"> </font></div>
<div><font face="Arial, sans-serif" size="2">Diagnostic run:</font></div>
<div><font face="Arial, sans-serif" size="2"> </font></div>
<div><font face="Courier New, monospace">sidney87% omero admin diagnostics</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">================================================================================</font></div>
<div><font face="Courier New, monospace">OMERO Diagnostics Beta-4.1.1-r5927-b91</font></div>
<div><font face="Courier New, monospace">================================================================================</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Commands: java -version 1.6.0 (/msrc/apps/jdk_1.6/bin/java -- 2 others)</font></div>
<div><font face="Courier New, monospace">Commands: python -V 2.6.5 (/sid/Omero/Python/bin/python -- 2 others)</font></div>
<div><font face="Courier New, monospace">Commands: icegridnode --version 3.4.0 (/sid/Omero/Ice/Ice-3.4.0/bin/icegridnode)</font></div>
<div><font face="Courier New, monospace">Commands: icegridadmin --version 3.4.0 (/sid/Omero/Ice/Ice-3.4.0/bin/icegridadmin)</font></div>
<div><font face="Courier New, monospace">Commands: psql --version 8.3.10 (/sid/Omero/Postgres/8.3/bin/psql)</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Server: icegridnode running</font></div>
<div><font face="Courier New, monospace">Server: Blitz-0 active (pid = 7016, enabled)</font></div>
<div><font face="Courier New, monospace">Server: DropBox inactive (disabled)</font></div>
<div><font face="Courier New, monospace">Server: FSServer active (pid = 7029, enabled)</font></div>
<div><font face="Courier New, monospace">Server: Indexer-0 active (pid = 7031, enabled)</font></div>
<div><font face="Courier New, monospace">Server: OMERO.Glacier2 active (pid = 7034, enabled)</font></div>
<div><font face="Courier New, monospace">Server: OMERO.IceStorm inactive (disabled)</font></div>
<div><font face="Courier New, monospace">Server: Processor-0 inactive (disabled)</font></div>
<div><font face="Courier New, monospace">Server: Tables-0 inactive (disabled)</font></div>
<div><font face="Courier New, monospace">Server: TestDropBox inactive (enabled)</font></div>
<div><font face="Courier New, monospace">Server: Web active (pid = 7774, enabled)</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Log dir: /sid/Omero/Omero_install/omero_dist/var/log exists</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Log files: Blitz-0.log 44.0 KB errors=2 warnings=34 </font></div>
<div><font face="Courier New, monospace">Log files: DropBox.log n/a</font></div>
<div><font face="Courier New, monospace">Log files: FSServer.log 2.0 KB errors=0 warnings=12 </font></div>
<div><font face="Courier New, monospace">Log files: Indexer-0.log 3.0 KB errors=0 warnings=2 </font></div>
<div><font face="Courier New, monospace">Log files: OMEROweb.log 0.0 KB </font></div>
<div><font face="Courier New, monospace">Log files: OMEROweb.log.2010-05-11 0.0 KB </font></div>
<div><font face="Courier New, monospace">Log files: Processor-0.log n/a</font></div>
<div><font face="Courier New, monospace">Log files: Tables-0.log n/a</font></div>
<div><font face="Courier New, monospace">Log files: TestDropBox.log n/a</font></div>
<div><font face="Courier New, monospace">Log files: master.err 6.0 KB errors=0 warnings=4 </font></div>
<div><font face="Courier New, monospace">Log files: master.out 0.0 KB </font></div>
<div><font face="Courier New, monospace">Log files: Total size 0.06 MB</font></div>
<div><font face="Courier New, monospace">sidney88% </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">I <font face="Arial, sans-serif" size="2" color="#0000FF">also </font>set the<font face="Arial, sans-serif" size="2" color="#0000FF"> Omero web parameters, </font>like so:</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">sidney85% omero web settings</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Please enter the domain you want to run OMERO.web on (<a href="http://www.domain.com:8000/):http://sidney.pnl.gov:8000"><font color="#0000FF"><u>http://www.domain.com:8000/):http://sidney.pnl.gov:8000</u></font></a></font></div>
<div><font face="Courier New, monospace">Please enter the Email address you want to send from (omero_admin@example.com): ronald.taylor@pnl.gov Please enter the SMTP server host you want to send from (smtp.example.com): mailhost.emsl.pnl.gov</font></div>
<div><font face="Courier New, monospace">Optional: please enter the SMTP server port (default 25): </font></div>
<div><font face="Courier New, monospace">Optional: Please enter the SMTP server username: </font></div>
<div><font face="Courier New, monospace">Optional: Password: </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Optional: TSL? (yes/no): </font></div>
<div><font face="Courier New, monospace">Saved to /sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/custom_settings.py</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Please enter Username for OMERO.web administrator: rtaylor </font></div>
<div><font face="Courier New, monospace">Please enter Email address: ronald.taylor@pnl.gov </font></div>
<div><font face="Courier New, monospace">Please enter password for OMERO.web administrator: r*****9</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Please re-enter password for OMERO.web administrator: r*****9</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace"><string>:36: DeprecationWarning: the sha module is deprecated; use the hashlib module instead </font></div>
<div><font face="Courier New, monospace">Saved to /sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/initial_data.json</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Database synchronization...</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">Creating table django_admin_log</font></div>
<div><font face="Courier New, monospace">Creating table auth_permission</font></div>
<div><font face="Courier New, monospace">Creating table auth_group</font></div>
<div><font face="Courier New, monospace">Creating table auth_user</font></div>
<div><font face="Courier New, monospace">Creating table auth_message</font></div>
<div><font face="Courier New, monospace">Creating table django_content_type</font></div>
<div><font face="Courier New, monospace">Creating table django_session</font></div>
<div><font face="Courier New, monospace">Creating table django_site</font></div>
<div><font face="Courier New, monospace">Creating table feedback_emailtemplate</font></div>
<div><font face="Courier New, monospace">Creating table webadmin_gateway</font></div>
<div><font face="Courier New, monospace">Installing index for admin.LogEntry model Installing index for auth.Permission model Installing index for auth.Message model Installing json fixture 'initial_data' from absolute path.</font></div>
<div><font face="Courier New, monospace">Installed 2 object(s) from 1 fixture(s)</font></div>
<div><font face="Courier New, monospace">OMERO.web was configured successful. Please start the application.</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">sidney86% </font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Courier New, monospace">%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%</font></div>
<div><font face="Courier New, monospace"> </font></div>
<div><font face="Arial, sans-serif" size="2" color="#D47500">___________________________________________</font></div>
<div><font face="Verdana, sans-serif" size="2">Ronald Taylor, Ph.D.</font></div>
<div><font face="Verdana, sans-serif" size="2">Computational Biology & Bioinformatics Group</font></div>
<div><font face="Verdana, sans-serif" size="2">Pacific Northwest National Laboratory</font></div>
<div><font face="Verdana, sans-serif" size="2">902 Battelle Boulevard</font></div>
<div><font face="Verdana, sans-serif" size="2">P.O. Box 999, Mail Stop J4-33</font></div>
<div><font face="Verdana, sans-serif" size="2">Richland, WA 99352 USA</font></div>
<div><font face="Verdana, sans-serif" size="2">Office: 509-372-6568</font></div>
<div><font face="Verdana, sans-serif" size="2">Email: ronald.taylor@pnl.gov</font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Courier New, monospace"> </font></div>
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