[ome-users] Bugs and suggestion

[Filipe Vilas-Boas]

I have found 2 more "bugs"

1 - After merging ROIs on the Measurement Tool they are kept in some sort of
directory (represented by several circles on top of each other). Any
annotations that I write on those "main directories" are lost after closing
the file, even if I save the ROIs before closing.

2 - When I am viewing an image on one channel, but it is the other channel
that is selected on the rendering controls, then I can't select on the
rendering controls the channel I am viewing before switching first to the
second channel. For example: I am viewing the green channel, but the red
channel is selected on the rendering controls. If I want to change the
levels of the green channel I have first to click on the red channel on the
rendering controls, then click on the green channel on the rendering
controls and only then I am able to change the levels for the green channel.
By contrast, if I click on a channel on the rendering controls it switches
immediatly to that channel on the image display
Suggestion: when viewing a channel, switch automatically the rendering
controls channel to the same that is being viewed

Cheers,
Filipe Vilas-Boas

On Tue, Jan 26, 2010 at 5:38 PM, Filipe Vilas-Boas <filipevb at gmail.com>wrote:

> Hi,
> I would like to point some "bugs" that I have encountered when using
> the measurement tools recently and also to give some suggestions:
>
> 1 - When I merge ROIs the annotations are lost. If I only have an
> annotation on one of the ROIs, why not keep it? For example, I mark 1 cell
> with an ROI and write its name under the annotations. Then during the
> following timepoints I label the same cell and merge everything, but the
> annotation of th first ROI is lost. I suggest you make it stay there after
> merging.
>
> 2 - After I merge ROIs I can go to "intensity results view" and press "add
> all". I have found a bug in this process that disorganizes all ROIs. If I
> have a list of ROIs for timepoints 1,2,3,4,5,etc, then they will appear like
> 2,5,1,3,4. I always have to sort the data after I export it to excel...
>
> 3 - After I follow a cell in 3D throughout all those timepoints and it is
> finally identified with ROIs, I would like to be able to make a movie
> with images selected by the ROIs. For example, T=1 Z=3, T=2 Z=6, T=3 Z=4,
> T=4 Z=5, T=5 Z=1 (this meaning that the cell goes up and down throughout
> time). I know that I can go to each image and export it and then join
> everything together in ImageJ, for instance, but if Omero could make a movie
> using the list of the ROIs present in the Measurement Tool it would be
> great!
>
> Cheers,
> Filipe Vilas-Boas
>
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