[ome-users] Web interface on ubuntu
Alex Sossick
ajs17 at cam.ac.uk
Thu Aug 12 10:44:51 BST 2010
Hi All
Having decided to dump my mac server as the place to install OMERO, I have
settle on ubuntu,
To test, I have installed ubuntu as a virtual machine using parrallels and
everything works really well, am really happy with the ease of installation,
The only thing I can not get to work is the web interface, the log in window
appears but it does not get passed the log in window, if I put the wrong
name or password I get an error but with the correct name and password no
error,
Using bin/omero web start every thing works fine. (clearly this is not
running now)
Have put this into apache2.conf
--==--
<Location "/">
SetHandler python-program
PythonHandler django.core.handlers.modpython
SetEnv DJANGO_SETTINGS_MODULE omeroweb.settings
PythonDebug On
PythonPath "['/home/omero/Desktop/omero/lib/python',
'/home/omero/Desktop/omero/var/lib',
'/home/omero/Desktop/omero/lib/python/omeroweb'] + sys.path"
</Location>
--==--
Have installed python-django
Any ideas, its clearly something I have missed, below is a snippet from the
OMEROweb.log and the omero diagnostics
Thanks
Alex
--==--
Thu, 12 Aug 2010 10:22:28 omero.util.UpgradeCheck ERROR <urlopen error
[Errno 110] Connectio
n timed out>
Thu, 12 Aug 2010 10:22:28 webgateway INFO
getBlitzConnection(host=localhost, port=4064, s
sl=True, username=root)
Thu, 12 Aug 2010 10:22:29 blitz_gateway INFO created connection
(uuid=341b2eeb-6c08-4f60-b3
54-ff8be61d2e69)
Thu, 12 Aug 2010 10:23:54 omero.util.UpgradeCheck ERROR <urlopen error
[Errno 110] Connectio
n timed out>
Thu, 12 Aug 2010 10:23:54 webgateway INFO
getBlitzConnection(host=localhost, port=4064, s
sl=True, username=root)
Thu, 12 Aug 2010 10:23:54 blitz_gateway INFO created connection
(uuid=81a292ea-03ea-42c3-96
c8-105b206fb87a)
Thu, 12 Aug 2010 10:31:27 omero.util.UpgradeCheck ERROR <urlopen error
[Errno 110] Connectio
n timed out>
Thu, 12 Aug 2010 10:31:27 webgateway INFO
getBlitzConnection(host=localhost, port=4064, s
sl=True, username=root)
Thu, 12 Aug 2010 10:31:27 blitz_gateway INFO created connection
(uuid=b96928aa-b568-4c59-97
58-22b77bed269c)
Thu, 12 Aug 2010 10:41:39 views-admin INFO INIT '6086'
Thu, 12 Aug 2010 10:41:39 views-web INFO INIT '6086'
Thu, 12 Aug 2010 10:41:40 omero.util.UpgradeCheck INFO no update needed
Thu, 12 Aug 2010 10:41:40 webgateway INFO
getBlitzConnection(host=localhost, port=4064, s
sl=True, username=root)
Thu, 12 Aug 2010 10:41:40 blitz_gateway INFO created connection
(uuid=80b3d818-a154-492d-96
35-f31238b497dc)
--==--
omero at ubuntu:~/Desktop/omero$ bin/omero admin diagnostics
============================================================================
====
OMERO Diagnostics Beta-4.2.0-r7571-b29
============================================================================
====
Commands: java -version 1.6.0 (/usr/bin/java)
Commands: python -V 2.6.5 (/usr/bin/python)
Commands: icegridnode --version 3.3.1 (/usr/bin/icegridnode)
Commands: icegridadmin --version 3.3.1 (/usr/bin/icegridadmin)
Commands: psql --version 8.4.4 (/usr/bin/psql)
Server: icegridnode running
Server: Blitz-0 active (pid = 2050, enabled)
Server: DropBox active (pid = 2059, enabled)
Server: FileServer active (pid = 2064, enabled)
Server: Indexer-0 active (pid = 2065, enabled)
Server: MonitorServer active (pid = 2068, enabled)
Server: OMERO.Glacier2 active (pid = 2069, enabled)
Server: OMERO.IceStorm active (pid = 2073, enabled)
Server: Processor-0 active (pid = 2071, enabled)
Server: Repository-1 error: node `repo' couldn't be
reached:
the node is not active
Server: Tables-0 inactive (disabled)
Server: TestDropBox inactive (enabled)
Log dir: /home/omero/Desktop/omero/var/log exists
Log files: Blitz-0.log 947.0 KB errors=0
warnings=38
Log files: DropBox.log 3.0 KB errors=2
warnings=0
Log files: FileServer.log 0.0 KB
Log files: Indexer-0.log 75.0 KB errors=1
warnings=18
Log files: MonitorServer.log 4.0 KB errors=6
warnings=2
Log files: OMEROweb.log 52.0 KB errors=110
warnings=0
Log files: Processor-0.log 2.0 KB
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: master.err 0.0 KB
Log files: master.out 0.0 KB
Log files: Total size 1.09 MB
Parsing Blitz-0.log:[line:69] => Server restarted <=
Parsing Blitz-0.log:[line:2174] => Server restarted <=
Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bi
n:/usr/games
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)
omero at ubuntu:~/Desktop/omero$ ifconfig -a
eth0 Link encap:Ethernet HWaddr 00:1c:42:e6:53:1a
inet addr:10.211.55.15 Bcast:10.211.55.255 Mask:255.255.255.0
inet6 addr: fe80::21c:42ff:fee6:531a/64 Scope:Link
UP BROADCAST RUNNING MULTICAST MTU:1500 Metric:1
RX packets:37926 errors:0 dropped:0 overruns:0 frame:0
TX packets:17698 errors:0 dropped:0 overruns:0 carrier:0
collisions:0 txqueuelen:1000
RX bytes:47475803 (47.4 MB) TX bytes:1480515 (1.4 MB)
Interrupt:10 Base address:0x8200
lo Link encap:Local Loopback
inet addr:127.0.0.1 Mask:255.0.0.0
inet6 addr: ::1/128 Scope:Host
UP LOOPBACK RUNNING MTU:16436 Metric:1
RX packets:280358 errors:0 dropped:0 overruns:0 frame:0
TX packets:280358 errors:0 dropped:0 overruns:0 carrier:0
collisions:0 txqueuelen:0
RX bytes:72694377 (72.6 MB) TX bytes:72694377 (72.6 MB)
--
Alex Sossick
Wellcome Trust/Cancer Research UK Gurdon Institute
University of Cambridge
Tennis Court Rd
Cambridge CB2 1QN
UK
email ajs17 at cam.ac.uk
tel 01223 334082
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