[ome-users] editing Images

[Will Moore]

Hi Swathi,

  I'm forwarding to the list since these questions should be answered  
by others...

On 11 Jun 2009, at 13:54, Bahuleyan Swathi wrote:

> Hi,
>
> Ok cool. So what if want to convolve or sharpen or deblur or do  
> similar kind of image processing in my image ??

Currently the only way to do this is to use a script to do the  
processing. We plan in the future to ship some common scripts with  
OMERO, but we don't do this yet.

>
> Also , can you pleas tell me how do i make the connection to the  
> Matlab ? As they say here : http://trac.openmicroscopy.org.uk/omero/ 
> wiki/OmeroMatlab#InstallingtheOMEROgatewayforMatlab     ..  i can't  
> find the jar file
>
> As far i have seen , the imageJ plugin and VisBio are inactive ,  
> they don't work with OME now ! So , is it the same case with  
> Matlab ? Can matlab be connected to omero  ( or is it also outdated  
> with the current omero api ? )  ?

Matlab can connect to the OMERO Beta-4 server. The docs have not been  
updated since the release. Not sure how much the API has changed.
We are currently working on an ImageJ plugin to connect to the OMERO  
server. Some issues still remaining.
VisBio is not currently under development but I believe that some  
work is planned in the future, wrt OMERO connection.


   Will.


>
> Thanks
>
> -Swathi
>
>
> -----Original Message-----
> From: Will Moore [mailto:will at lifesci.dundee.ac.uk]
> Sent: Thu 6/11/2009 2:42 PM
> To: Bahuleyan  Swathi
> Subject: Re: [ome-users] editing Images
>
> Hi,
>
>   Yes, insight allows you to view, annotate, tag, rate, etc.
> You cannot edit the image metadata currently. We have not yet worked
> on how to distinguish between imported metadata and user-edited
> metadata.
> You can edit the rendering settings of images, and do image
> projections etc.
>
>    Will.
>
> On 11 Jun 2009, at 12:49, Bahuleyan Swathi wrote:
>
>>
>>
>> Hi Will,
>>
>> Thanks .
>>
>> So where do i edit images ? in .insight ?
>>
>> -swathi
>> -----Original Message-----
>> From: Will Moore [mailto:will at lifesci.dundee.ac.uk]
>> Sent: Thu 6/11/2009 12:45 PM
>> To: Bahuleyan  Swathi
>> Cc: ome-users at lists.openmicroscopy.org.uk
>> Subject: Re: [ome-users] editing Images
>>
>> Hi Swathi,
>>
>>   The OMERO.editor is for annotating images with additional
>> (experimental) metadata, not for editing Images or image metadata in
>> the OMERO database.
>> It creates XML files which can be read locally, or used to annotate
>> Projects, Datasets or Images on an OMERO server.
>>
>> You might want to see the demo movie for the Beta-4 OMERO.editor, for
>> an idea of the intended Editor workflow...
>> http://cvs.openmicroscopy.org.uk/snapshots/omero/editor/movies/
>> OMERO.editor-Beta4.mov
>>
>>   Thanks,
>>
>>    Will.
>>
>>
>>
>> On 11 Jun 2009, at 11:15, Bahuleyan Swathi wrote:
>>
>>> Hi all ,
>>>
>>>
>>> I seriously can't find out how to download images from the omero
>>> server to .editor and  how to edit the images via .editor  Or can
>>> it only edit the experimental variables and not the image , as it
>>> is given here :   http://trac.openmicroscopy.org.uk/shoola/wiki/
>>> OmeroEditor#OMERO.editor    ??
>>>
>>> -Swathi Bahuleyan
>>> Final year Undergrad
>>> Dept. of Electrical Engineering
>>> _______________________________________________
>>> ome-users mailing list
>>> ome-users at lists.openmicroscopy.org.uk
>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>
>> William Moore
>> Division of Gene Regulation and Expression
>> College of Life Sciences
>> University of Dundee
>> Scotland
>> DD1 5PH
>>
>> Tel 01382 386364
>>
>>
>
> William Moore
> Division of Gene Regulation and Expression
> College of Life Sciences
> University of Dundee
> Scotland
> DD1 5PH
>
> Tel 01382 386364
>
>

William Moore
Division of Gene Regulation and Expression
College of Life Sciences
University of Dundee
Scotland
DD1 5PH

Tel 01382 386364

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