[ome-users] NumberFormatException import .zvi file

[Susan Wilson]

Hi again,

I downloaded the latest trunk build of the loci_tools.jar and placed  
it in the plugins folder and re-ran ImageJ.  The LOCI Bioformats  
Importer gives the same error on that zvi file that OMERO.insight does.

Susan

On Sep 24, 2008, at 2:20 PM, Curtis Rueden wrote:

> Hi Susan,
>
> That exception looks like a bug in Bio-Formats to me. Are you able  
> to import the ZVI file into ImageJ using the Bio-Formats Importer  
> plugin (http://www.loci.wisc.edu/ome/formats-imagej.html) with the  
> latest trunk build (http://www.loci.wisc.edu/ome/formats-download.html)?
>
> -Curtis
>
> On Wed, Sep 24, 2008 at 3:09 PM, Susan Wilson <smwilson at hpc.unm.edu>  
> wrote:
> Hi,
>
> Runniing Beta3.0.1 all around.  This is the error I get when I attempt
> to import a .zvi file:
>
> java.lang.NumberFormatException: For input string: "9/17/2008 7:05:39
> PM"
>        at
> java
> .lang.NumberFormatException.forInputString(NumberFormatException.java:
> 48)
>        at java.lang.Long.parseLong(Long.java:412)
>        at java.lang.Long.parseLong(Long.java:461)
>        at  
> loci.formats.in.ZeissZVIReader.initMetadata(ZeissZVIReader.java:623)
>        at  
> loci.formats.in.ZeissZVIReader.initFile(ZeissZVIReader.java:513)
>        at loci.formats.FormatReader.setId(FormatReader.java:216)
>        at loci.formats.ImageReader.setId(ImageReader.java:565)
>        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:71)
>        at loci.formats.ChannelFiller.setId(ChannelFiller.java:186)
>        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:71)
>        at loci.formats.ChannelSeparator.setId(ChannelSeparator.java: 
> 61)
>        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:71)
>        at ome.formats.importer.ImportLibrary.open(ImportLibrary.java: 
> 181)
>        at  
> ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:
> 355)
>        at  
> ome.formats.importer.ImportHandler.importImages(ImportHandler.java:
> 172)
>        at ome.formats.importer.ImportHandler.access 
> $0(ImportHandler.java:106)
>        at ome.formats.importer.ImportHandler 
> $1.run(ImportHandler.java:87)
>
> Also, I may be crazy, but the documentation for OMERO.insight does not
> match what I am seeing.  This error is on my MAC to OMERO.server on
> debian.  I downloaded and ran both (linux) importer and insight on the
> localhost debian host and got the same importer error and the same
> insight application.  Help/About shows Beta3.0.1, which is the server
> I am running, but insight has no categories, no "Browse Button"...
> And importer won't import the zvi on either platform.
>
> Thanks.
> Susan
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20080924/5be0e10a/attachment.html>