[ome-users] Error while installing OME Server

Nandakumar, Sriramkumar sriramkumar at uky.edu
Mon Oct 27 19:01:53 GMT 2008


Hi Daniel,
There is no support for CURLOPT_MUTE in latest OME.
In the  cURL.pm file, I have commented the line which uses that macro and continued with Installation.
Hope this could be helpful.

Thanks & Regards,
Sriram.
________________________________________
From: daniquijano at gmail.com [daniquijano at gmail.com] On Behalf Of Dani Díaz de Quijano [diazdequijano at ub.edu]
Sent: Monday, October 27, 2008 11:59 AM
To: Nandakumar, Sriramkumar
Cc: ome-users at lists.openmicroscopy.org.uk
Subject: Re: [ome-users] Error while installing OME Server

I am having exactly the same problem.
Did you figure out how to proceed?

In fact I am quite a newbie. I tried to install OME on Ubuntu some months ago and now I am trying to on fedora 9. I am a newbie in Linux as well...


Thank you very much for your time


Daniel Diaz de Quijano i Barbero


2008/10/14 Nandakumar, Sriramkumar <sriramkumar at uky.edu<mailto:sriramkumar at uky.edu>>
Hi,

I am encountering the following error while installing OME Server.

Errors loading module: /usr/bin/perl /usr/lib/perl5/5.8.8/ExtUtils/xsubpp  -typemap /usr/lib/perl5/5.8.8/ExtUtils/typemap   cURL.xs > cURL.xsc && mv cURL.xsc cURL.c
gcc -c  -I/home/kimlab/Desktop/OME/OME-2.6.1 -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables   -DVERSION=\"0.00\" -DXS_VERSION=\"0.00\" -fPIC "-I/usr/lib/perl5/5.8.8/i386-linux-thread-multi/CORE"   cURL.c
cURL.xs: In function 'new':
cURL.xs:26: error: 'CURLOPT_MUTE' undeclared (first use in this function)
cURL.xs:26: error: (Each undeclared identifier is reported only once
cURL.xs:26: error: for each function it appears in.)
cURL.xs:17: warning: unused variable 'obj'
cURL.xs: In function 'POST':
cURL.xs:50: warning: unused variable 'uploadSize'
cURL.xs: In function 'GET_file':
cURL.xs:158: warning: unused variable 'response'
make: *** [cURL.o] Error 1

A problem was encountered while attempting to compile and install your Inline
C code. The command that failed was:
 make > out.make 2>&1

The build directory was:
/OME/Inline/build/OME/Util/cURL

To debug the problem, cd to the build directory, and inspect the output files.

 at /home/kimlab/Desktop/OME/OME-2.6.1/src/perl2/OME/Util/cURL.pm line 161
Compilation failed in require at /home/kimlab/Desktop/OME/OME-2.6.1/src/perl2/OME/Install/ApacheConfigTask.pm line 55.
BEGIN failed--compilation aborted at /home/kimlab/Desktop/OME/OME-2.6.1/src/perl2/OME/Install/ApacheConfigTask.pm line 55.
Compilation failed in require at (eval 189) line 3.

 at install.pl line 79
       main::run_tasks() called at install.pl line 266



I have run the tests using  the command, perl install -c.
Pls. find the result below,

 \_ Term::ReadKey 2.30 [OK].
 \_ Storable 2.15 [OK].
 \_ Carp::Assert 0.20 [OK].
 \_ Compress::Zlib 2.005 [OK].
 \_ DBI 1.58 [OK].
 \_ Digest::MD5 2.36 [OK].
 \_ MD5 [OK].
 \_ MIME::Base64 3.07 [OK].
 \_ Log::Agent 0.307 [OK].
 \_ Time::HiRes 1.86 [OK].
 \_ Date::Parse 2.27 [OK].
 \_ DBD::Pg 2.10.7 [OK].
 \_ Test::Harness 2.56 [OK].
 \_ Test::Simple 0.8 [OK].
 \_ HTML::Template 2.9 [OK].
 \_ IPC::Run 0.80 [OK].
 \_ Class::Accessor 0.31 [OK].
 \_ Class::Data::Inheritable 0.06 [OK].
 \_ File::Temp 0.16 [OK].
 \_ Exporter::Lite 0.02 [OK].
 \_ UNIVERSAL::exports 0.05 [OK].
 \_ URI 1.35 [OK].
 \_ HTML::Tagset 3.10 [OK].
 \_ HTML::Parser 3.56 [OK].
 \_ Parse::RecDescent 1.95.1 [OK].
 \_ Inline::C 0.44 [OK].
 \_ XML::NamespaceSupport 1.09 [OK].
 \_ XML::Sax 1.01 [OK].
 \_ XML::LibXML::Common 0.13 [OK].
 \_ XML::LibXML 1.62 [OK].
 \_ XML::Parser 2.34 [OK].
 \_ SOAP::Lite 0.68 [OK].
 \_ XML::LibXSLT 1.62 [OK].
 \_ OLE::Storage_Lite 0.14 [OK].
 \_ Spreadsheet::ParseExcel 0.32 [OK].
Check passed


Could anyone please help me in resolving the above problem?

Thanks in Advance.

Thanks & Regards,
Sriram.
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