[ome-users] Help Needed. Unable to open Omero Clients.
Nandakumar, Sriramkumar
sriramkumar at uky.edu
Mon Nov 17 21:20:10 GMT 2008
Hi Josh,
Thanks for the reply.
Your suggestion was really very useful.
I have removed Icetea and deployed java seperately.
Now both Omero Insight and Import are opening on the machine where I deployed Omero Server.
Now I want both these applications to be opened in another machines.
I have sent the output of netstat -na and ifconfig -a commands in my previous mail.
Could you please help me in resolving the OMERO Client problem?
Once again Thanks a lot for your help.
Thanks & Regards,
Sriram.
________________________________________
From: josh.moore at gmx.de [josh.moore at gmx.de]
Sent: Friday, November 14, 2008 4:38 PM
To: Nandakumar, Sriramkumar
Cc: ome-users at lists.openmicroscopy.org.uk
Subject: Re: [ome-users] Help Needed. Unable to open Omero Clients.
Nandakumar, Sriramkumar writes:
> Hi Josh,
> I forgot to mention my OS details in my previous mail.
> I am using Fedora 8 and my Java version is 1.6.
Thanks for this. And which Java distribution are you using?
java -version
A similar exception as in your log can also be seen here:
http://markmail.org/message/i3v7a63wpfggiwl7
due to using IceTea. If that is the case, could you install the Java SDK
from Sun and try again; if not, we'll dig a little deeper.
Best wishes,
~Josh.
> Thanks & Regards,
> Sriram.
> ________________________________________
> From: Nandakumar, Sriramkumar
> Sent: Friday, November 14, 2008 3:05 PM
> To: josh.moore at gmx.de
> Cc: ome-users at lists.openmicroscopy.org.uk
> Subject: RE: [ome-users] Help Needed. Unable to open Omero Clients.
>
> Hi Josh,
>
> Thanks for the reply.
>
> I have attached the outputs of netstat -na and ifconfig -a in this mail for your reference.
> In my previous mail I have mentioned that it is not possible for me to invoke Omero Insight even the machine where I have deployed Omero Server.
> In the Omero Insight log I saw Null pointer exception in the beginning itself. I suspect that may be the reason why Insight is not invoked.
> I have attached the logs of Omero Insight in this mail.
>
> It would be really helpful if you can assist me in resolving this Omero Client problem.
>
> Thanks in Advance.
>
> Thanks & Regards,
> Sriram.
> ________________________________________
> From: josh.moore at gmx.de [josh.moore at gmx.de]
> Sent: Friday, November 14, 2008 3:25 AM
> To: Nandakumar, Sriramkumar
> Cc: ome-users at lists.openmicroscopy.org.uk
> Subject: [ome-users] Help Needed. Unable to open Omero Clients.
>
> Nandakumar, Sriramkumar writes:
> > Hi,
>
> Hello Sriramkumar,
>
> > These are the messages displayed when starting the Omero server. I
> > am seeing two STDERR messages (last two lines) and I am not sure
> > about this error. But it is possible for me to see the Omero
> > server page in the screen without any problem. ...
>
> > 2008-11-13 16:21:42,504 ERROR [ STDERR] ( main) Nov 13, 2008
> > 4:21:42 PM java.util.prefs.FileSystemPreferences$7 run WARNING:
> > Prefs file removed in background /root/.java/.userPrefs/prefs.xml
> > 2008-11-13 16:21:42,506 ERROR [ STDERR] ( main) Nov 13, 2008
> > 4:21:42 PM java.util.prefs.FileSystemPreferences$7 run WARNING:
> > Prefs file removed in background
> > /usr/lib/jvm/java-1.7.0-icedtea-1.7.0.0/jre/.systemPrefs/prefs.xml
>
> These two "errors" come straight from Java and unfortunately, or
> fortunately depending on how you look at it, have nothing to do with
> OMERO. You can safely ignore them, but if you are interested you might
> look at:
>
> http://bugs.sun.com/bugdatabase/view_bug.do?bug_id=4751177
>
> for the original bug report. They are related to how Java is installed
> on Linux.
>
> > 1) All the necessary ports such as 8080, 1098, 4444, 3873, 1099 are open
> > 2) Please find my /etc/hosts
> >
> > 127.0.0.1 localhost
> > 128.163.118.171 myomero.uky.edu myomero
> >
> > where myomero is my hostname and myomero.uky.edu is in the format (hostname.network domain)
> >
> > which is as mentioned in the Omero troubleshooting page.
>
> If you can reach the server locally with insight and importer, but not
> from another machine, then unless I'm mistaken this must be a
> networking issue. Could you send us the full output of:
>
> netstat -na
> ifconfig -a
>
> and perhaps a little information about your operating system. All of
> this can be done off list if you prefer.
>
> Best wishes,
> ~Josh.
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