[ome-users] Problems with OMERO.importer

[Brian Loranger]

Hi again Caterina,

This is the first time any of us have seen that error so it is a real  
mystery for us. Let me try to get a bit more information if I can to  
track it down:

1. Do you use the bio-formats package anywhere else? I'm wondering if  
perhaps your classpath is referencing a different version of bio- 
formats somewhere.
2. You downloaded the macintosh client bundle and are using the  
OMERO.importer application? (as opposed to something like the linux  
bundle, where you would call the application using the importer.sh  
script).
3. You have the importer and insight in the default directly  
(although it should give you a warning message if its not in that  
folder).
4. You have write permission to your user home directly (the clients  
create a directly called 'omero' there to store log and ini files).

Also, can you tell me what version of macintosh you're using?
If possible, can you send me the importer.log file located in your ~/ 
omero/log/ directory (there may be additional debug information  
located in there).

Cheers and hopefully we can track this down for you,

Brian Loranger
Software Developer, Open Microscopy Environment
Division of Gene Regulation and Expression
University of Dundee
(The University of Dundee is a registered Scottish charity, No:  
SC015096)




On 4 Nov 2008, at 16:00, Caterina Strambio De Castillia wrote:

> Hi Brian and thank you for your fast reply.
>
> The answer is yes to both questions:
> the OMERO.importer is the version that came in the latest download
> bundle, and I have double checked it is the right version Beta 3.1.1;
>
>   the Java version is as follows:
>
> "local-ca% java -version
> java version "1.5.0_16"
> Java(TM) 2 Runtime Environment, Standard Edition (build 1.5.0_16-
> b06-275)
> Java HotSpot(TM) Client VM (build 1.5.0_16-132, mixed mode, sharing)"
>
> Any idea?
>
> CIAO
> Caterina
>
>
>
>
> On 4-nov-08, at 16:16, Brian Loranger wrote:
>
>> Hi Caterina,
>>
>> This one is new to me, are you using the default install of the
>> 3.1.1 importer and java version 1.5 or better?
>>
>> Thanks,
>>
>> Brian Loranger
>> Software Developer, Open Microscopy Environment
>> Division of Gene Regulation and Expression
>> University of Dundee
>> (The University of Dundee is a registered Scottish charity, No:
>> SC015096)
>>
>>
>>
>>
>> On 4 Nov 2008, at 14:57, Caterina Strambio De Castillia wrote:
>>
>>> Dear All,
>>> Mario and I are proceeding with our OMERO installation. After some
>>> glitches this morning, the OMERO.server 3.1.1 is up an running.
>>> I have now installed the clients on my laptop and while the editor
>>> and the insight work well, the importer does not launch. It gives
>>> me a Java error as follows:
>>>
>>> <2008-11-04_OMERO.importer_error.tiff>
>>>
>>> "Cannot launch Java application
>>>
>>> Uncaught exception in main method:
>>> java.lang.VeriryError: (class: loci/format/in/
>>> APNGReader, method: initFile signature: (Ljava/lang/
>>> String;)V) incompatible argument to function"
>>>
>>> Can anybody help me figure this out?
>>>
>>> Thank you
>>>
>>> Caterina
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> ____________________________
>>> Caterina Strambio De Castillia, Dottore in Biologia, PhD
>>> Senior Research Scientist
>>> Laboratory of Viral replication, pathogenesis, and immunity
>>>
>>> http://www.mimo.unige.ch/luban_lab/
>>>
>>> Department of Microbiology and Molecular Medicine
>>> University of Geneva
>>> Switzerland
>>>
>>>
>>> ****
>>> Visiting Scientist
>>> Laboratory of Cellular and Structural Biology
>>> The Rockefeller University
>>> 1230 York Avenue
>>> New York NY 10065
>>>
>>>
>>>
>>> _______________________________________________
>>> ome-users mailing list
>>> ome-users at lists.openmicroscopy.org.uk
>>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>>
>
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