[ome-users] Big problems with OMERO.importer on Mac OSx
» Ruben Alves
rubenalves at fm.ul.pt
Mon May 12 14:35:11 BST 2008
Hi Brian,
Actually, i don't know how is configured the firewall of this mac in
particular, but last week i was on a G4 with firewall off and i had the
same problem... The strangest thing is really the fact that the for
OMERO.insight is working perfectly. And the problem is really only with
those mac.
For the moment, my teamate is out for launch, i'll try later with
firewall off and i'll capturing the logs again.
My best regards,
// Ruben
Brian Loranger wrote:
> Hi Ruben,
>
> We haven't had anyone else reporting this problem. However, the error
> message you send me implies that your mac is fire-walled off (its a
> connection refused error, so its not seeing an open port on the
> server). Are you sure everything is OK with your firewall settings?
>
> Also, make sure you have the latest (Feb 08) version of the importer
> from our downloads page, which you you can get
> from http://trac.openmicroscopy.org.uk/omero/wiki/MilestoneDownloads*.
> *I don't think that's the problem you have, but the new version does
> have some bug fixes for other things.
>
> Hope that helps,
>
> Brian Loranger
> Software Developer, Open Microscopy Environment
> Division of Gene Regulation and Expression
> University of Dundee
>
>
> On 12 May 2008, at 11:12, » Ruben Alves wrote:
>
>> Hi everyone,
>> I'm a fresh new user of OMERO (maybe one month), and i've build a fresh
>> new Linux Server with OMERO here at IMM.
>> Everything is working fine in every aspect. But, recently one of the
>> project manager whanted to try it, but he just can't connect to OMERO on
>> is MacOSx. But he only can't connect on the OMERO.importer, because the
>> OMERO.insight is currently working perfectly in Windows , Linux and of
>> course Mac.
>> I've exported the error log. It's important to know, at the connection
>> time, my firewall was off (iptables -F | iptables -X). And at the same
>> time (with 1 or 2 minutes difference), another connection was
>> established with a Windows client AND a Linux (ubuntu) client. The
>> windows client was on the network, and the ubuntu client was on a
>> Virtual Machine.
>>
>> I Really hope someone had this kind of bad experience. I've spent so
>> many hours on that, and now i can't get a neutral view of the
>> problematic.
>>
>> Best regards,
>>
>> // Ruben
>> ps: actually, on the log "ruben" is the login and "10.20.20.52" is the
>> server ip address.
>>
>> 0 [ Thread-5] DEBUG ome.formats.OMEROMetadataStore
>> - Initializing store: ruben/<3chars> 10.20.20.52:1099
>> 1013 [ Thread-5] INFO ome.formats.importer.LoginHandler
>> - java.lang.Exception:
>> org.springframework.jndi.JndiLookupFailureException:
>> JndiObjectTargetSource failed to obtain new target object; nested
>> exception is javax.naming.CommunicationException [Root exception is
>> java.rmi.ConnectException: Connection refused to host: ubuntu.fm.ul.pt;
>> nested exception is:
>> java.net.ConnectException: Connection refused]
>> at ome.formats.OMEROMetadataStore.<init>(OMEROMetadataStore.java:152)
>> at
>> ome.formats.importer.LoginHandler.isValidLogin(LoginHandler.java:227)
>> at ome.formats.importer.LoginHandler.access$10(LoginHandler.java:223)
>> at ome.formats.importer.LoginHandler$1.run(LoginHandler.java:137)
>> Caused by: org.springframework.jndi.JndiLookupFailureException:
>> JndiObjectTargetSource failed to obtain new target object; nested
>> exception is javax.naming.CommunicationException [Root exception is
>> java.rmi.ConnectException: Connection refused to host: ubuntu.fm.ul.pt;
>> nested exception is:
>> java.net.ConnectException: Connection refused]
>> at
>> org.springframework.jndi.JndiObjectTargetSource.getTarget(JndiObjectTargetSource.java:138)
>>
>> at ome.client.JBossTargetSource.getTarget(JBossTargetSource.java:73)
>> at
>> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:184)
>>
>> at $Proxy6.findByString(Unknown Source)
>> at ome.formats.OMEROMetadataStore.<init>(OMEROMetadataStore.java:149)
>> ... 3 more
>> Caused by: javax.naming.CommunicationException [Root exception is
>> java.rmi.ConnectException: Connection refused to host: ubuntu.fm.ul.pt;
>> nested exception is:
>> java.net.ConnectException: Connection refused]
>> at org.jnp.interfaces.NamingContext.lookup(NamingContext.java:724)
>> at org.jnp.interfaces.NamingContext.lookup(NamingContext.java:589)
>> at javax.naming.InitialContext.lookup(InitialContext.java:351)
>> at
>> org.springframework.jndi.JndiTemplate$1.doInContext(JndiTemplate.java:123)
>> at org.springframework.jndi.JndiTemplate.execute(JndiTemplate.java:85)
>> at org.springframework.jndi.JndiTemplate.lookup(JndiTemplate.java:121)
>> at org.springframework.jndi.JndiTemplate.lookup(JndiTemplate.java:146)
>> at
>> org.springframework.jndi.JndiLocatorSupport.lookup(JndiLocatorSupport.java:93)
>>
>> at
>> org.springframework.jndi.JndiObjectLocator.lookup(JndiObjectLocator.java:105)
>>
>> at
>> org.springframework.jndi.JndiObjectTargetSource.getTarget(JndiObjectTargetSource.java:131)
>>
>> ... 7 more
>> Caused by: java.rmi.ConnectException: Connection refused to host:
>> ubuntu.fm.ul.pt; nested exception is:
>> java.net.ConnectException: Connection refused
>> at sun.rmi.transport.tcp.TCPEndpoint.newSocket(TCPEndpoint.java:574)
>> at
>> sun.rmi.transport.tcp.TCPChannel.createConnection(TCPChannel.java:185)
>> at sun.rmi.transport.tcp.TCPChannel.newConnection(TCPChannel.java:171)
>> at sun.rmi.server.UnicastRef.invoke(UnicastRef.java:94)
>> at org.jnp.server.NamingServer_Stub.lookup(Unknown Source)
>> at org.jnp.interfaces.NamingContext.lookup(NamingContext.java:627)
>> ... 16 more
>> Caused by: java.net.ConnectException: Connection refused
>> at java.net.PlainSocketImpl.socketConnect(Native Method)
>> at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
>> at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
>> at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
>> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:430)
>> at java.net.Socket.connect(Socket.java:520)
>> at java.net.Socket.connect(Socket.java:470)
>> at java.net.Socket.<init>(Socket.java:367)
>> at java.net.Socket.<init>(Socket.java:180)
>> at
>> sun.rmi.transport.proxy.RMIDirectSocketFactory.createSocket(RMIDirectSocketFactory.java:22)
>>
>> at
>> sun.rmi.transport.proxy.RMIMasterSocketFactory.createSocket(RMIMasterSocketFactory.java:128)
>>
>> at sun.rmi.transport.tcp.TCPEndpoint.newSocket(TCPEndpoint.java:569)
>> ... 21 more
>>
>>
>> --
>> Ruben Alves
>> USI @ Instituto de Medicina Molecular
>> Edifício Egas Moniz
>> Av. Prof. Egas Moniz 1649-028 Lisboa Portugal
>> tel: 217999400 ext 47026
>>
>> _______________________________________________
>> ome-users mailing list
>> ome-users at lists.openmicroscopy.org.uk
>> <mailto:ome-users at lists.openmicroscopy.org.uk>
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
--
Ruben Alves
USI @ Instituto de Medicina Molecular
Edifício Egas Moniz
Av. Prof. Egas Moniz 1649-028 Lisboa Portugal
tel: 217999400 ext 47026
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